View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_low_11 (Length: 239)
Name: NF14263_low_11
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 4311496 - 4311285
Alignment:
| Q |
14 |
ttacctaccataaataacaggtatagatggtacttgagggtagtcttgaagagaatttctagaaagaaatgaagagtaaacatagttgttattgtggttt |
113 |
Q |
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| T |
4311496 |
ttacctaccataaataacaggtatagatggtacttgagggtagtcttgaagagaatttctagaaagaaatgaagagtaagcatagttgttattgtggttt |
4311397 |
T |
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| Q |
114 |
tgtgaagtactagcaattcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4311396 |
tgtgaagtactagcaattcctttggtggaaaagtccatgatgtctttagctttatcagctggaacatcatcaaacacaattactttcccatcataaaaga |
4311297 |
T |
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| Q |
214 |
ttgtcatttgtg |
225 |
Q |
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|||||||||||| |
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| T |
4311296 |
ttgtcatttgtg |
4311285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 4306134 - 4305928
Alignment:
| Q |
19 |
taccataaataacaggtatagatggtacttgagggtagtcttgaagagaatttctagaaagaaatgaagagtaaacatagttgttattgtggttttgtga |
118 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| |
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| T |
4306134 |
taccataaatagcaggtatagatggtacttgataacagtcttgaagagaatttctagcaagaaatgaagagtaagcatagttgttattgtggtgttgtga |
4306035 |
T |
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| Q |
119 |
agtactagcaattcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaagattgtc |
218 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
4306034 |
agtactagtaattcctttagtggaaaagtccatgatgtctttggctttatcagctggaacatcatcaaacacaattactttcccatcatacaagattgtc |
4305935 |
T |
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| Q |
219 |
atttgtg |
225 |
Q |
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||||||| |
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| T |
4305934 |
atttgtg |
4305928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 225
Target Start/End: Complemental strand, 4294425 - 4294330
Alignment:
| Q |
130 |
ttcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaagattgtcatttgtg |
225 |
Q |
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||||||||||| ||||| |||||||| | || |||| |||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4294425 |
ttcctttggtgcaaaagaccatgatgcccttgactttttcagctggaatatcatcaaacacaattactttcccatcataaaaaattgtcatttgtg |
4294330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 4300962 - 4300869
Alignment:
| Q |
130 |
ttcctttggtggaaaagtccatgatgtctttagctttatcagctggaacattatcaaacacaattactttcccatcataaaagattgtcatttg |
223 |
Q |
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|||||| || ||||||| |||||||||| | |||| |||||||||| || |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
4300962 |
ttccttcggaggaaaagaccatgatgtcctcgactttttcagctggaatatcatcaaacacaattattttcccatcataaaaaattgtcatttg |
4300869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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