View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_low_12 (Length: 232)
Name: NF14263_low_12
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33452887 - 33452678
Alignment:
| Q |
1 |
tactatgtacgttatttcttatcaagtctgcatacaatattatatttgtggttaaatcaaattaatattcaaattctgccaagccgtccttagccgtttg |
100 |
Q |
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| T |
33452887 |
tactacgtacgttatttcttatcaagtctgcatgcaatattatatttgtggttaaatcaaattaatattcaaattctgccaagccgtccatagccgtttg |
33452788 |
T |
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| Q |
101 |
ttgcaatcccccctcaccctgatattttatgtgtatatat----atatctgtatttaatctcttatagaaagtaaccaaattaaacaaagaaagagcaat |
196 |
Q |
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| T |
33452787 |
ttgcaatcccccctcaccctgatattttatgtgtatatatatatatatctgtatttaatctcttatagaaagtaaccaaattaaacaaagaaagagcaat |
33452688 |
T |
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| Q |
197 |
actagtactt |
206 |
Q |
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|||||||||| |
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| T |
33452687 |
actagtactt |
33452678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 33442571 - 33442428
Alignment:
| Q |
59 |
aaattaatattcaaattctgccaagccgtccttagccgtttgttgcaatcccccctcaccctgatattttatgtgtatatatatatctgtatttaatctc |
158 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||| |||||||||||||| | ||||| |||||| |
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| T |
33442571 |
aaattaatattcaaattctgccaagccgtccttagccgtttgtgacaatcccc--ttgccctgaaattatatgtgtatatatac--ccgtattcaatctc |
33442476 |
T |
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| Q |
159 |
ttatagaaagtaaccaaattaaacaaagaaagagcaatactagtactt |
206 |
Q |
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| T |
33442475 |
ttatattaagtaacaaaattaaacaaagaaagagcaatactagtactt |
33442428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 33442658 - 33442587
Alignment:
| Q |
8 |
tacgttatttcttatca-agtctgcatacaatattata-tttgtggttaaatcaaattaatattcaaattct |
77 |
Q |
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|||||||||||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
33442658 |
tacgttatttcttatcttagtctaaatacgatattataatttgtagttaaatcaaattaatattcaaattct |
33442587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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