View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_low_3 (Length: 459)
Name: NF14263_low_3
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 54302597 - 54303024
Alignment:
| Q |
16 |
cttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcagaaatgtcttcatcatttga |
115 |
Q |
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| T |
54302597 |
cttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaatgtcttcatcatttga |
54302696 |
T |
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| Q |
116 |
tgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagacaattt |
215 |
Q |
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| T |
54302697 |
tgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatctgcagacaattt |
54302796 |
T |
|
| Q |
216 |
caatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnngataaacctgtatata |
315 |
Q |
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| T |
54302797 |
gaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaagataaacctgtatata |
54302896 |
T |
|
| Q |
316 |
tggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttcatctctcatggccgat |
415 |
Q |
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| T |
54302897 |
tggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttcatctctcatggccgat |
54302996 |
T |
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| Q |
416 |
cgctgtatgtcatctgctaccactcata |
443 |
Q |
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| T |
54302997 |
cgctgtatatcatctgctaccactcata |
54303024 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
158 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
211 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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