View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14263_low_4 (Length: 426)
Name: NF14263_low_4
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 33383661 - 33384006
Alignment:
| Q |
20 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33383661 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33383759 |
T |
|
| Q |
120 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33383760 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33383859 |
T |
|
| Q |
220 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
33383860 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacat |
33383959 |
T |
|
| Q |
320 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33383960 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
33384006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 33384792 - 33385137
Alignment:
| Q |
20 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384792 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33384890 |
T |
|
| Q |
120 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384891 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33384990 |
T |
|
| Q |
220 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
33384991 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacat |
33385090 |
T |
|
| Q |
320 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33385091 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
33385137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 33384228 - 33384573
Alignment:
| Q |
20 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384228 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33384326 |
T |
|
| Q |
120 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384327 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33384426 |
T |
|
| Q |
220 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
33384427 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccacacat |
33384526 |
T |
|
| Q |
320 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384527 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
33384573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 33090583 - 33090747
Alignment:
| Q |
186 |
atcaactatgttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctc |
285 |
Q |
| |
|
||||||| ||||||||||| || | | |||||| |||||||| ||||| | ||||||||||| ||| | |||||||||||| ||||||| |||| |
|
|
| T |
33090583 |
atcaacttagttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttttgaccgtgctatgtttaagacatacactactgctg |
33090682 |
T |
|
| Q |
286 |
aagatatgaaagtgttgtcgggacatccgcacatcattaaagttgttggaattagagacgtggag |
350 |
Q |
| |
|
| ||| |||||||||| |||| || | |||| || |||||||| ||||||| |||| |||||| |
|
|
| T |
33090683 |
atgatcagaaagtgttgctgggagattctcacaccactaaagttgctggaattggagaagtggag |
33090747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 13583922 - 13584003
Alignment:
| Q |
195 |
gttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacataca |
276 |
Q |
| |
|
||||||||||| || | | |||||| |||||||| ||||| | ||||||||||||||| | ||||||||| || ||||||| |
|
|
| T |
13583922 |
gttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttatgaccgtgctatgttcaagacataca |
13584003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University