View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_low_6 (Length: 364)
Name: NF14263_low_6
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 208 - 349
Target Start/End: Original strand, 42564461 - 42564602
Alignment:
| Q |
208 |
caaatttaactttggacttggatgactattaactttgtcatcaactccacccttatatattataaaagatacatacagattgagttaatataaaaggaaa |
307 |
Q |
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| T |
42564461 |
caaatttaactttggacttggatgactattaactttgtcatcaactccacccttatatattataaaagatacatacagattgagttaatataaaagggaa |
42564560 |
T |
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| Q |
308 |
tgcttatgaggggctttccttcaaacattattatcattttcc |
349 |
Q |
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| T |
42564561 |
tgcttatgaggggctttccttcaaacattactatcattttcc |
42564602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 42564275 - 42564366
Alignment:
| Q |
19 |
gtacccatattcaatatcacttcaaaataagatttaaaactgcgcaatcaactatcaacaacataaacaaaggaaaaaattaaggaaccaac |
110 |
Q |
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| T |
42564275 |
gtacccatattcaatatcacttcaaaataagatttaaaactgtgcaatcaactatcaacaacataaacaaaggaaaaaattaagaaaccaac |
42564366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 40913981 - 40914035
Alignment:
| Q |
282 |
acagattgagttaatataaaaggaaatgcttatgaggggctttccttcaaacatt |
336 |
Q |
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| T |
40913981 |
acagattgagttaaaataaaaggaaatgcttctgaggggctttccttcaaccatt |
40914035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 12718473 - 12718422
Alignment:
| Q |
285 |
gattgagttaatataaaaggaaatgcttatgaggggctttccttcaaacatt |
336 |
Q |
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| T |
12718473 |
gattgagttagactaaaaggaaatgcttctgaggggctttccttcaaccatt |
12718422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 2887342 - 2887288
Alignment:
| Q |
282 |
acagattgagttaatataaaaggaaatgcttatgaggggctttccttcaaacatt |
336 |
Q |
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| T |
2887342 |
acagattgagttagaataaaaggaaatacttctgaagggctttccttcaaccatt |
2887288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 3147195 - 3147249
Alignment:
| Q |
282 |
acagattgagttaatataaaaggaaatgcttatgaggggctttccttcaaacatt |
336 |
Q |
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| T |
3147195 |
acagattgagttagaataaaaggaaatacttctgaagggctttccttcaaccatt |
3147249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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