View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_low_9 (Length: 303)
Name: NF14263_low_9
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 2560675 - 2560941
Alignment:
| Q |
15 |
aacctgtggaaaaactctaaaaatacatattatttaattttataannnnnnnatagtggacatgtactatactaacatatcaacaattttttgacgctag |
114 |
Q |
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| T |
2560675 |
aacctgtggaaaaactctaaaaatacatattatttaattttataatttttttatagtggacatgtactatactaacatatcaacaattttttgacgctac |
2560774 |
T |
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| Q |
115 |
ccgattcccttgtgagtgtgttgcttcatcgttacggttaggtttcccctaatctgtacgtttggtatctcaggtatgtatgtgtgtattctatgtaatg |
214 |
Q |
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| T |
2560775 |
----ttcccttgtgagtgtgttggttcatcgttacggttaggtttcccctaatctgtacgtttggtatctcaggtatgtatgtgtgtattctatgtaatg |
2560870 |
T |
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| Q |
215 |
ggatcaagtttcaattgaagtggattattcttagatgtaattccatagtccgtcaattccttagtcaatac |
285 |
Q |
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| T |
2560871 |
ggatcaagtttcaattgaagtggattattcttaaatgtaattccatagtccgtcaattccctagtaaatac |
2560941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 2559430 - 2559477
Alignment:
| Q |
227 |
aattgaagtggattattcttagatgtaattccatagtccgtcaattcc |
274 |
Q |
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| T |
2559430 |
aattgaagtggattattcttagatgtaattccatagtccgtcaattcc |
2559477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 16933352 - 16933273
Alignment:
| Q |
20 |
gtggaaaaactctaaaaatacatattatttaattttataannnnnnnatagtggacatgtactatactaacatatcaaca |
99 |
Q |
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| T |
16933352 |
gtggaaaagctctcaaaatacatattatttatttttataatttgtttataatggacatgttctatactaagatattaaca |
16933273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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