View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14264_high_1 (Length: 549)
Name: NF14264_high_1
Description: NF14264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14264_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 52810312 - 52810846
Alignment:
| Q |
1 |
cttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtcaaaatattatta---attaaattcatctaatgtttggggttctttcttccatc |
97 |
Q |
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| T |
52810312 |
cttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtcaaaatattattattaattaaattcatctaatgtttggg-ttctttcttccatc |
52810410 |
T |
|
| Q |
98 |
ttttttagaaattaatatagcttgcttgctatatcactttgtttggttcaacttcaagttaataatgttttgttttatctcagagctagcttaccgaaaa |
197 |
Q |
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| T |
52810411 |
ttttttagaaattaatatagcttgcttgctatatcactttgtttggttcaacttcaagttaataatgttttgttttatctcagagctagcttaccgaaaa |
52810510 |
T |
|
| Q |
198 |
tcatcactgtggagaatctttctacaacctttgatggcagatctagaacccagaacctcaaaaagtttgtctgccttggctggagcaacatcccatttcc |
297 |
Q |
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| T |
52810511 |
tcatcactgtgcagaatctttctacaacctttgatggcagatctagaacccagaacctcaaaaagtttgtctgccttggctggagcaacatcccatttcc |
52810610 |
T |
|
| Q |
298 |
tagcagcagctgtaaaaacctgagcaacccttacgacagggtttcctgatggcttcaagtatctatatttaggagatcctgataaaaatgtcaaaagggc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52810611 |
tagcagcagctgtaaaaacctgagcaacccttacgacagggtttcctgatggcttcaagtatctatatttaggagatcctgataaaaatgtcaaaagggc |
52810710 |
T |
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| Q |
398 |
tatgatagcagagatcaatgatataaagaaacccattgtccacttccctgtgtcctcataatagaccaatacagtattggagaacaaagatccaacgttg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52810711 |
tatgatagcagagatcaatgatataaagaaacccattgtccacttccccgtgtcctcataatagaccaatacagtattggagaacaaagatccaacgttg |
52810810 |
T |
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| Q |
498 |
agggaaaagtaaaaataacagaagaaagctactttt |
533 |
Q |
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| T |
52810811 |
agggaaaagtaaaaataacagaagaaagctactttt |
52810846 |
T |
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