View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14264_high_2 (Length: 342)
Name: NF14264_high_2
Description: NF14264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14264_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 26382691 - 26382878
Alignment:
| Q |
1 |
ttaaattagaagtggcatgatatcgataaaactagaagctgctacttttggaaattataataacatgtgatggctgagatcactcttgaagatactaatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26382691 |
ttaaattagaagtggcatgatatcggtaaaactagaagctgctaattttggaaattataataacatgtgatggctgagatcactcttgaagatactaatc |
26382790 |
T |
|
| Q |
101 |
gcttgagaatcaagacaaaattgtttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcg |
188 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26382791 |
gtttgagaatcaagacaaaattgtttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcg |
26382878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 14366743 - 14367095
Alignment:
| Q |
20 |
atatcgataaaactagaagctgctacttttggaaattataataacatgtgatggctgagatcactcttgaagatactaatcgcttgagaatcaagacaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
14366743 |
atatcgataaaactagaagctgctacttttg-aaattataataacatgtgacggctgagatcactcttgaggatactagtcgcctgagaatcaagacaaa |
14366841 |
T |
|
| Q |
120 |
attg--------------tttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcggcagttcag-------- |
197 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14366842 |
attgtggttatttttctttttactagatttccatggaagactatacttataagattttataacttcataactttatcgtttcggcggttcagtatactta |
14366941 |
T |
|
| Q |
198 |
----------tagtagattgtcattatttcctttttatgacgtggtatacctcatact-gaaattttgttttg---------------tttggttaattt |
271 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
14366942 |
ttgctaaatttagtagattgtcacttttccctttttatgacgtggtatacctcatactggaatttttgttttgtgaaccaaactcgtatttggttaattt |
14367041 |
T |
|
| Q |
272 |
aaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14367042 |
aaggatttgtttatttacttcaatatttggcaatttaagatgcttcagttgcct |
14367095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 3 - 325
Target Start/End: Complemental strand, 19576816 - 19576450
Alignment:
| Q |
3 |
aaattagaagtggcatgatatcgataaaactagaagctgctacttttggaaattataataacatgtgatggctgagatcactcttgaagatactaatcgc |
102 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
19576816 |
aaattagaagtggcat---atcgataaaactagaaactgctacttttg-aaattataataacatgtgacggctgagatcactcttgaggatactaatcgc |
19576721 |
T |
|
| Q |
103 |
ttgagaatcaagacaaaattg-------------tttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttcgg |
189 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19576720 |
ctgagaatcaagacaaaattgtggttattttctttttactagatttccatggaagactatacttataagattttataacttcataactttatcgtttcgg |
19576621 |
T |
|
| Q |
190 |
cagttcag------------------tagtagattgtcattatttcctttttatgacgtggtatacctcatact-gaaattttgttttg----------- |
259 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
19576620 |
cggttcagtatacttattgctaaatttagtagattgtcattttttcctttttatggcgtggtatacctcatactcgaatttttgttttgtgaaccaaact |
19576521 |
T |
|
| Q |
260 |
-----tttggttaatttaaggatttgtttatttacttcaatatttggcaatttaagatgcttcagtcgcct |
325 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
19576520 |
cgtatttgggttaatttaaggatttgtttatttacttcaatatttagcaatttaagatgcttcagttgcct |
19576450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8856500 - 8856293
Alignment:
| Q |
1 |
ttaaattagaagtggcatgatatcgataaaactagaagctgctacttttggaaattataataacatgtgatggctgagatcactcttgaagatactaatc |
100 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
8856500 |
ttaaattagaattggcat---atcgataaaactagaagctgctacttttg-aaattataataacatgtgacggctgagatcactcttgaagttactaatc |
8856405 |
T |
|
| Q |
101 |
gcttgagaatcaagacaaaattg-------------tttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttc |
187 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8856404 |
acctgagaatcaagacaaaattgtggttattctctttttactagatgtccatggaagactatacttataagattttataacttcataactttatcgtttc |
8856305 |
T |
|
| Q |
188 |
ggcagttcagta |
199 |
Q |
| |
|
||| |||||||| |
|
|
| T |
8856304 |
ggcggttcagta |
8856293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 8856208 - 8856064
Alignment:
| Q |
198 |
tagtagattgtcattatttcctttttatgacgtggtatacctcatactgaaattttgttttgt-----------------ttggttaatttaaggatttg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| ||| |||||||||||||||| |
|
|
| T |
8856208 |
tagtagattgtcattatttcctttttatgccgtggtatacctcatactagaactttgttttgtgaaccaaactagtatttttgattaatttaaggatttg |
8856109 |
T |
|
| Q |
281 |
tttatttacttcaatatttggcaatttaagatgcttcagtcgcct |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8856108 |
tttatttacttcaatatttggcaatttaagatgcttcagtcgcct |
8856064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 8856259 - 8856225
Alignment:
| Q |
165 |
taacttcataactttatcgtttcggcagttcagta |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
8856259 |
taacttcataactttatcgtttcggcggttcagta |
8856225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University