View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14264_low_2 (Length: 439)

Name: NF14264_low_2
Description: NF14264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14264_low_2
NF14264_low_2
[»] chr3 (12 HSPs)
chr3 (128-423)||(22449209-22449513)
chr3 (128-302)||(22437918-22438106)
chr3 (128-221)||(22448953-22449046)
chr3 (129-311)||(22439951-22440142)
chr3 (128-302)||(22446255-22446432)
chr3 (185-300)||(22449044-22449169)
chr3 (128-223)||(22359293-22359392)
chr3 (128-223)||(22369195-22369294)
chr3 (47-104)||(22438607-22438664)
chr3 (47-95)||(7272562-7272610)
chr3 (47-92)||(22446817-22446862)
chr3 (47-92)||(23626248-23626293)
[»] scaffold0036 (1 HSPs)
scaffold0036 (345-403)||(28358-28416)
[»] chr2 (9 HSPs)
chr2 (47-93)||(38358268-38358314)
chr2 (47-92)||(25641086-25641132)
chr2 (47-84)||(7318404-7318441)
chr2 (47-84)||(9468539-9468576)
chr2 (47-84)||(11093978-11094015)
chr2 (47-92)||(19272663-19272708)
chr2 (47-96)||(31122282-31122331)
chr2 (47-92)||(38127764-38127809)
chr2 (47-95)||(36525600-36525648)
[»] chr6 (5 HSPs)
chr6 (47-92)||(9222655-9222700)
chr6 (47-92)||(18591122-18591167)
chr6 (47-93)||(20504420-20504466)
chr6 (47-92)||(8237987-8238032)
chr6 (47-87)||(14291406-14291446)
[»] chr4 (8 HSPs)
chr4 (47-88)||(17494565-17494606)
chr4 (47-92)||(28951117-28951162)
chr4 (47-93)||(5514358-5514404)
chr4 (47-92)||(29104160-29104205)
chr4 (47-92)||(31226510-31226555)
chr4 (47-92)||(51353444-51353489)
chr4 (47-91)||(17696394-17696437)
chr4 (48-92)||(49300739-49300783)
[»] chr1 (5 HSPs)
chr1 (47-92)||(21853561-21853606)
chr1 (47-85)||(11336291-11336329)
chr1 (47-85)||(11494310-11494348)
chr1 (47-92)||(1824516-1824561)
chr1 (47-95)||(972842-972890)
[»] chr7 (4 HSPs)
chr7 (47-92)||(5864774-5864820)
chr7 (47-93)||(24478025-24478071)
chr7 (47-84)||(24233629-24233666)
chr7 (47-84)||(38608003-38608040)
[»] scaffold0430 (1 HSPs)
scaffold0430 (47-92)||(12812-12857)
[»] scaffold0179 (1 HSPs)
scaffold0179 (47-84)||(2741-2778)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-92)||(63360-63405)
[»] chr8 (2 HSPs)
chr8 (47-92)||(25653705-25653750)
chr8 (47-92)||(34227328-34227373)
[»] chr5 (3 HSPs)
chr5 (47-92)||(4413928-4413973)
chr5 (47-92)||(12148237-12148282)
chr5 (55-95)||(32717022-32717062)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 128 - 423
Target Start/End: Original strand, 22449209 - 22449513
Alignment:
Q  128 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacctgagt---- 223  Q
    ||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||        
T  22449209 taattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtatagaactgaaaccatggttgaaataatctttaacctgagttaac 22449308  T
Q  224 -----ctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattgcccattcaaaactaaattaaattatttacccccca 318  Q
         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22449309 aaagtctttcttttgactaacactttaaaatgattaaattacaccttacattgcatagccaattgcccattcaaaactaaattaaattatttacccccca 22449408  T
Q  319 ctgcacctgagttgacattcaataaagcaacattcaatattaattatgactaagtccctgaaaaacaatgatttgattatgaaactgataaagctctatc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22449409 ctgcacctgagttgacattcaataaagcaacattcaatattaattataactaagtccctgaaaaacaatgatttgattatgaaactgataaagctctatg 22449508  T
Q  419 aactt 423  Q
    |||||    
T  22449509 aactt 22449513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 128 - 302
Target Start/End: Complemental strand, 22438106 - 22437918
Alignment:
Q  128 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacctg------- 220  Q
    ||||||| |||| ||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |           
T  22438106 taattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattaaacttaaaccatggttgaaacaatctttaaccagagttaag 22438007  T
Q  221 -------agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattgcccattcaaaactaaatta 302  Q
           ||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  22438006 ttaacaaagtctttcttttgactaaggctttaaaatggttaaactacacctcacattgcatagccaattgcccattcaaaactaaatta 22437918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 22448953 - 22449046
Alignment:
Q  128 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacctga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22448953 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaacaatctttaacctga 22449046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 129 - 311
Target Start/End: Complemental strand, 22440142 - 22439951
Alignment:
Q  129 aattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacctg-------- 220  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||            
T  22440142 aattaacaaagctaatcttctctttaactagtgattgttgaatcagttgggattattaaacttaaaccatggtggaaacaatctttaacctgagttaaca 22440043  T
Q  221 -agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattgcccattcaaaactaaattaaattattta 311  Q
     ||||||||||||| | |||||||||||||| |||||    |||| |||||||||||||||||| | |||||||||||| ||||||||||||    
T  22440042 aagtctttcttttgtccaagactttaaaatggttaaagattacctcacattgcatagccaattggcgattcaaaactaatttaaattattta 22439951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 128 - 302
Target Start/End: Complemental strand, 22446432 - 22446255
Alignment:
Q  128 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacctg------- 220  Q
    ||||||| |||| ||||||| ||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |           
T  22446432 taattaacaaagttagtcttttctttaactagtgacagttgaatcaatttggagtattgaacttaaaccatggttgaaacaatctttaaccagttaacaa 22446333  T
Q  221 agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattgcccattcaaaactaaatta 302  Q
    ||| ||||||||||| ||| |||||||||| ||||| ||||||| |||||||||||||    ||||||||||||||||||||    
T  22446332 agtttttcttttgaccaagtctttaaaatggttaaactacacctcacattgcatagcc----gcccattcaaaactaaatta 22446255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 22449044 - 22449169
Alignment:
Q  185 tgaacttaaaccatggttgaaataatctttaacctgagt---------ctttcttttgactaagactttaaaatgattaaattacaccttacattgcata 275  Q
    |||||||| ||||||||||||||||||||||||||||||         |||||||||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  22449044 tgaacttacaccatggttgaaataatctttaacctgagttaacaaagtctttcttttgaccaagactttaaaatggttaaagtacacctcacattgcata 22449143  T
Q  276 gccaa-ttgcccattcaaaactaaat 300  Q
    ||||| ||||||||||||||||||||    
T  22449144 gccaatttgcccattcaaaactaaat 22449169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 22359392 - 22359293
Alignment:
Q  128 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagta----ttgaacttaaaccatggttgaaataatctttaacctgagt 223  Q
    ||||||| |||| ||||||||||||||||||||||  ||||||||||||||||| |    || |||||||||||||||||||| ||||||||||||||||    
T  22359392 taattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagaaagaattaaacttaaaccatggttgaaacaatctttaacctgagt 22359293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 22369294 - 22369195
Alignment:
Q  128 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagta----ttgaacttaaaccatggttgaaataatctttaacctgagt 223  Q
    ||||||| |||| ||||||| ||||||||||||||  ||||||||||||||||| |    || |||||||||||||||||||| ||||||||||||||||    
T  22369294 taattaacaaagttagtcttttctttaactagtgacagttgaatcaattgggagaaagaattaaacttaaaccatggttgaaacaatctttaacctgagt 22369195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 22438607 - 22438664
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttttctatcaaatg 104  Q
    ||||||||||| ||||| | ||||||||||| |||||||||||||| ||||| |||||    
T  22438607 ggttaatagtgctttaacctctataatatagatcatttctggttttctctatgaaatg 22438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 7272562 - 7272610
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 95  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||||||    
T  7272562 ggttaatagtattttaccccctctaatataggtcatttctggttttttc 7272610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 22446817 - 22446862
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||  ||||| |||||||||||||||||||||| |||||    
T  22446817 ggttaatagtactttaacccctataatataggtcatttctagtttt 22446862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 23626293 - 23626248
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  23626293 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 23626248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 28358 - 28416
Alignment:
Q  345 gcaacattcaatattaattatgactaagtccctgaaaaacaatgatttgattatgaaac 403  Q
    |||| ||||||||| ||||||||||  || | |||||||||||||||||||||||||||    
T  28358 gcaatattcaatatcaattatgactgggtacttgaaaaacaatgatttgattatgaaac 28416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 38358268 - 38358314
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttt 93  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  38358268 ggttaatagtgttttactccctgtaataaaggtcatttctggttttt 38358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 25641132 - 25641086
Alignment:
Q  47 ggttaatagtgttttaatccc-tataatataggtcatttctggtttt 92  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  25641132 ggttaatagtgtttttatcccctataatataagtcatttctggtttt 25641086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 7318441 - 7318404
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcattt 84  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  7318441 ggttaatagtgttttatcccctataatataggtcattt 7318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 9468576 - 9468539
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcattt 84  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  9468576 ggttaatagtgttttacaccctataatataggtcattt 9468539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 11093978 - 11094015
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcattt 84  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  11093978 ggttaatagtgttttaccccctataatataggtcattt 11094015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 19272663 - 19272708
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  19272663 ggttaatagtgttttatcccctgtaatataggtcatttccggtttt 19272708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 31122331 - 31122282
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttttct 96  Q
    ||||||||||||||||  || |||||||||||||||||  ||||||||||    
T  31122331 ggttaatagtgttttaccccttataatataggtcattttcggttttttct 31122282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 38127764 - 38127809
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  38127764 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 38127809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 36525648 - 36525600
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 95  Q
    ||||||||||||||||  |||| |||||||||||||||  |||||||||    
T  36525648 ggttaatagtgttttaccccctgtaatataggtcattttcggttttttc 36525600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 9222700 - 9222655
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||    
T  9222700 ggttaatagtgttttaccccctataatataggacatttctggtttt 9222655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 18591122 - 18591167
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  18591122 ggttaatagtgttttatcccctataatataggtcatttccggtttt 18591167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 20504466 - 20504420
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttt 93  Q
    ||||||||||||||||  || | ||||||||||||||||||||||||    
T  20504466 ggttaatagtgttttaccccatgtaatataggtcatttctggttttt 20504420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 8238032 - 8237987
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  8238032 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 8237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 14291446 - 14291406
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctg 87  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  14291446 ggttaatagtgttttactccctgtaatataggccatttctg 14291406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 17494606 - 17494565
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctgg 88  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  17494606 ggttaatagtgttttaacccctgtaatataggtcatttctgg 17494565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 28951162 - 28951117
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||    
T  28951162 ggttaaaagtgttttaccccctataatataggtcatttctggtttt 28951117  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 5514358 - 5514404
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttt 93  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||    
T  5514358 ggttaatagtattttactccctataatataggtcattttcggttttt 5514404  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 29104160 - 29104205
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  29104160 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 29104205  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 31226555 - 31226510
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  31226555 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 31226510  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 51353489 - 51353444
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||| ||||  |||| |||||||||||||||||||||||    
T  51353489 ggttaatagtgatttaccccctgtaatataggtcatttctggtttt 51353444  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 17696437 - 17696394
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttt 91  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||    
T  17696437 ggttaatagtgttttac-ccctgtaatataggtcatttctggttt 17696394  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 49300739 - 49300783
Alignment:
Q  48 gttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    |||||||||||||||  |||| |||||||||||||||| ||||||    
T  49300739 gttaatagtgttttaccccctgtaatataggtcatttccggtttt 49300783  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 21853561 - 21853606
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  21853561 ggttaatagtgttttaccccctataatataggtcatttccggtttt 21853606  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 11336291 - 11336329
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttc 85  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11336291 ggttaatagtgttttatcccctataatataggtcatttc 11336329  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 11494310 - 11494348
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttc 85  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11494310 ggttaatagtgttttatcccctataatataggtcatttc 11494348  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 1824561 - 1824516
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||| | |||| |||||||||||||||| ||||||    
T  1824561 ggttaatagtgttttcacccctgtaatataggtcatttccggtttt 1824516  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 972842 - 972890
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 95  Q
    ||||||| ||||||||  |||| ||||||||||||||| ||||||||||    
T  972842 ggttaatggtgttttaccccctgtaatataggtcatttttggttttttc 972890  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 5864820 - 5864774
Alignment:
Q  47 ggttaatagtgttttaatccc-tataatataggtcatttctggtttt 92  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  5864820 ggttaatagtgttttactcccctataatataggtcatttccggtttt 5864774  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 24478025 - 24478071
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggttttt 93  Q
    ||||||||||||||||  |||| |||||||||||||||| |||||||    
T  24478025 ggttaatagtgttttaccccctgtaatataggtcatttccggttttt 24478071  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 24233666 - 24233629
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcattt 84  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  24233666 ggttaatagtgttttaccccctataatataggtcattt 24233629  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 38608040 - 38608003
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcattt 84  Q
    |||||||||||||||  |||||||||||||||||||||    
T  38608040 ggttaatagtgtttttctccctataatataggtcattt 38608003  T

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Target: scaffold0430 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 12857 - 12812
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  12857 ggttaatagtgttttaccccctttaatataggtcatttccggtttt 12812  T

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Target: scaffold0179 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 2778 - 2741
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcattt 84  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  2778 ggttaatagtgttttaccccctataatataggtcattt 2741  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 63405 - 63360
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  63405 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 63360  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 25653705 - 25653750
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||    
T  25653705 ggttaatagtgttttaccccctgtaatataggtcatttttggtttt 25653750  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 34227328 - 34227373
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  34227328 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 34227373  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 4413928 - 4413973
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  4413928 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 4413973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 12148282 - 12148237
Alignment:
Q  47 ggttaatagtgttttaatccctataatataggtcatttctggtttt 92  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  12148282 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 12148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32717062 - 32717022
Alignment:
Q  55 gtgttttaatccctataatataggtcatttctggttttttc 95  Q
    ||||||||  |||||||||||||||||||| ||||||||||    
T  32717062 gtgttttaccccctataatataggtcatttttggttttttc 32717022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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