View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14265_high_3 (Length: 418)
Name: NF14265_high_3
Description: NF14265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14265_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 6 - 402
Target Start/End: Complemental strand, 10982585 - 10982189
Alignment:
| Q |
6 |
ttgttctccatacaatggccatgcccccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgag |
105 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10982585 |
ttgttctgcatacaatggccatgccaccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgag |
10982486 |
T |
|
| Q |
106 |
tcatgctttaatatcgcaccttgtggtgcccaatttcttaccaccattcccttttgctttgtcctctccaaaaacccttcagggagcaactcgtccaaac |
205 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10982485 |
tcatgctttaatattgcaccttgtggtgcccaatttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtccaaac |
10982386 |
T |
|
| Q |
206 |
tttgctcctctaagtccaaatcgctcctaacaatccacaagaatctttcctcacttttttccaatccaactgctatctcattcaactgagccttagaaaa |
305 |
Q |
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||||||||||||| ||||| |||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10982385 |
tttgctcctctaaatccaactcgctcctaataacccacaagaatctttgctcacttttttccaatccaagtgctatctcattcaactgagccttagaaaa |
10982286 |
T |
|
| Q |
306 |
tcttcccatgcttccaaaacttaacaacacgacgctttgaataggttgcgactcaagccaacttagacactcattttcatcttctccatatgaagat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10982285 |
tcttcccatgcttccaaaacttaacaacacgacgctttgaataggttgcgactcaagccaacttagacacccattttcatcttctccatatgaagat |
10982189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 400
Target Start/End: Complemental strand, 10968635 - 10968241
Alignment:
| Q |
6 |
ttgttctccatacaatggccatgcccccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgag |
105 |
Q |
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||||||| |||| |||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968635 |
ttgttctgcatataatggccacgccaccataggcactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgag |
10968536 |
T |
|
| Q |
106 |
tcatgctttaatatcgcaccttgtggtgcccaatttcttaccaccattcccttttgctttgtcctctccaaaaacccttcagggagcaactcgtccaaac |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10968535 |
tcatgctttaatattgcaccttgtggtgcccaatttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtccaaac |
10968436 |
T |
|
| Q |
206 |
tttgctcctctaagtccaaatcgctcctaacaatccacaagaatctttcctcacttttttccaatccaactgctatctcattcaactgagccttagaaaa |
305 |
Q |
| |
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||||||||||||||||||| || |||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10968435 |
tttgctcctctaagtccaactcactcctaacaacccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaa |
10968336 |
T |
|
| Q |
306 |
tcttcccatgcttccaaaacttaacaacacgacgctttgaataggttgcgactcaagccaacttagacactcattttcatcttctccatatgaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
10968335 |
tcttcccatgcttccaaaacttaacaacacgacgctttgactagattgcgactcgagccaacttagacactcattttcatcttctccataagaag |
10968241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 402
Target Start/End: Complemental strand, 11002815 - 11002419
Alignment:
| Q |
6 |
ttgttctccatacaatggccatgcccccataggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgag |
105 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||||||||| | |||||||||||| |||||||||||||| || |||||||||||||||| || |
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| T |
11002815 |
ttgttctgcatacaaaggccatgcaatcataggcactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaactgat |
11002716 |
T |
|
| Q |
106 |
tcatgctttaatatcgcaccttgtggtgcccaatttcttaccaccattcccttttgctttgtcctctccaaaaacccttcagggagcaactcgtccaaac |
205 |
Q |
| |
|
|| || | ||||| ||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| || | ||| || ||||||| |
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| T |
11002715 |
tcgtgactcaatattgcatcttgtggtgcccaatttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaac |
11002616 |
T |
|
| Q |
206 |
tttgctcctctaagtccaaatcgctcctaacaatccacaagaatctttcctcacttttttccaatccaactgctatctcattcaactgagccttagaaaa |
305 |
Q |
| |
|
| | ||||| |||| | |||||||| |||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
11002615 |
taagttcctccaagtttgactcgctccttacaatccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaa |
11002516 |
T |
|
| Q |
306 |
tcttcccatgcttccaaaacttaacaacacgacgctttgaataggttgcgactcaagccaacttagacactcattttcatcttctccatatgaagat |
402 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||| | | |||| ||||||||||| ||||||| |||||| |
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| T |
11002515 |
tctccccatgcttccaaaactcaaaaacacgacgctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagat |
11002419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 37 - 368
Target Start/End: Complemental strand, 11019165 - 11018834
Alignment:
| Q |
37 |
ggcactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgccc |
136 |
Q |
| |
|
||||| |||||||| | |||||||||||| ||||||||||||||||| ||||| |||||||| | |||| ||| | ||||||||| ||||||| |||| |
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|
| T |
11019165 |
ggcaccccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggccc |
11019066 |
T |
|
| Q |
137 |
aatttcttaccaccattcccttttgctttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaagtccaaatcgctcctaac |
236 |
Q |
| |
|
||||||| || ||||||||||| | |||||||||||||||||||||||| || | |||||||||||||| || ||| |||| || |||||||| |
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| T |
11019065 |
aatttctcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagtctggttcactcctaac |
11018966 |
T |
|
| Q |
237 |
aatccacaagaatctttcctcacttttttccaatccaactgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacg |
336 |
Q |
| |
|
|| |||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||||| |
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|
| T |
11018965 |
aacccacaagaatctttgctcacttttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccatgcttccaaagctcaacaacacg |
11018866 |
T |
|
| Q |
337 |
acgctttgaataggttgcgactcaagccaact |
368 |
Q |
| |
|
||||||||| | |||||||| || |||||||| |
|
|
| T |
11018865 |
acgctttgacttggttgcgagtcgagccaact |
11018834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 40 - 345
Target Start/End: Complemental strand, 11079922 - 11079617
Alignment:
| Q |
40 |
actccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatatcgcaccttgtggtgcccaat |
139 |
Q |
| |
|
|||||||| || | |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| ||| ||| ||| | ||||||||||||||| | |
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| T |
11079922 |
actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtggtgcccagt |
11079823 |
T |
|
| Q |
140 |
ttcttaccaccattcccttttgctttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaagtccaaatcgctcctaacaat |
239 |
Q |
| |
|
|||| || ||||||||||| | |||||||||||||||||||||||| || | |||||| ||||||||| | ||||| | |||| ||||||||||||||| |
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|
| T |
11079822 |
ttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaat |
11079723 |
T |
|
| Q |
240 |
ccacaagaatctttcctcacttttttccaatccaactgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgacg |
339 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||| ||| | ||||||||||||||||| || | ||||||||| || ||||| |||||| |
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| T |
11079722 |
ccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagccttagaaaatctccctaagcttccaaagctcaacaaaacgacg |
11079623 |
T |
|
| Q |
340 |
ctttga |
345 |
Q |
| |
|
|||||| |
|
|
| T |
11079622 |
ctttga |
11079617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 4493253 - 4493290
Alignment:
| Q |
67 |
gagttccatccacaatgtgtcacgaatccaccaatcga |
104 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
4493253 |
gagttccatccacaatgagtcaagaatccaccaatcga |
4493290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 11050312 - 11050235
Alignment:
| Q |
6 |
ttgttctccatacaatggccatgcccccataggcactccttcacatacagcttccaacaccgagttccatccacaatg |
83 |
Q |
| |
|
||||||| || |||| |||||||| ||| ||||| |||||| | | |||||||||||| ||||||||||||||||| |
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|
| T |
11050312 |
ttgttctgcaaacaaaggccatgcaatcattggcaccccttcataaatagcttccaacacggagttccatccacaatg |
11050235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 23628117 - 23628149
Alignment:
| Q |
56 |
cttccaacaccgagttccatccacaatgtgtca |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
23628117 |
cttccaacaccgagttccatccacaatgagtca |
23628149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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