View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14265_high_8 (Length: 308)
Name: NF14265_high_8
Description: NF14265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14265_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 884232 - 884506
Alignment:
| Q |
11 |
acagataagacatgtatataaatagaaaaacaatagatatttgttacattgtcatggtttgtataatgcatgtaatacatgtaaatatcttacctagttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
884232 |
acagataagacatgtatataaatagaaaaacaatagatatttgttacattgtcatgttttgtataatgcatgtaatacatgtaaatatcttacctagttt |
884331 |
T |
|
| Q |
111 |
gtataatgcaattagttaggtctaatttataattcctaatatgtgtgatactcattccggattcgtagctttctattacccatgcatgtctcagacaaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
884332 |
gtataatgcaattagttaggtctaatttataattcctaatatgtgtgatactcattccagattcgtagctttctattacccatgcatgtctcagacaagt |
884431 |
T |
|
| Q |
211 |
atcttacacaaccaaccaacacagatttcatttgacatatatctgttacttattctccttatcaatatattgatgatatta |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
884432 |
atcttacacaaccaaccaacacagatttcatttgac----atctgttacttattctccttatca--atattgatgatatta |
884506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University