View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14265_low_8 (Length: 353)
Name: NF14265_low_8
Description: NF14265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14265_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 6853852 - 6853520
Alignment:
| Q |
1 |
caaagtttctgtctgattaaatttgtatatttcatacattatttaccctagtattaccagttttatttagtagtctgttatatattatgctgtttaatta |
100 |
Q |
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| T |
6853852 |
caaagtttttgtctgattaaatttgtatatttcatacattatttaccctagtattaccagttttatttagtagtatgttatatattatgctgtttaatta |
6853753 |
T |
|
| Q |
101 |
attgcttagtaagttataggttgctgggggttgtaaacttcgaatttcacgaattccttgaattccatttatttgttcctttcttgatgttttgcaattt |
200 |
Q |
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| T |
6853752 |
attgcttagtaagttataggttgctgggggttgtacacttcgaatttcacgagttccttgatttccatttatttgttcctttcttcatgttttgcaattt |
6853653 |
T |
|
| Q |
201 |
atttagttgatattatattatgtaaagtatggaatgattttatttcaattcgatgacaaggaaggtgtatttagagtttggggtagtaagaactagtaaa |
300 |
Q |
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| T |
6853652 |
atgtagttgata-----ttatgtaaagtatggaatgatcttatttcaattcgatgacaaggaaggtgtatttagaatttggggtagtaagaactagtaaa |
6853558 |
T |
|
| Q |
301 |
cctcttggtcctagctcaacatattaagcccaagttca |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6853557 |
cctcttggtcctagctcaacatattaagcccaagttca |
6853520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 6824366 - 6824689
Alignment:
| Q |
10 |
tgtctgattaaatttgtatatttcatacattatttaccctagtattaccagttttatttagtagtctgttatatattatgctgtttaattaattgcttag |
109 |
Q |
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| T |
6824366 |
tgtctgattaaatttgtatatttcatacattatttaccctagtattaccagttttatttagtagtctgttatatattatgctgtttaattaattgcttag |
6824465 |
T |
|
| Q |
110 |
taagttataggttgctgggggttgtaaacttcgaatttcacgaattccttgaattccatttatttgttcctttcttgatgttttgcaatttatttagttg |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
6824466 |
taagttataggttgctgggggttgtacacttcgaatttcacgagttccttgatttccatttatttgttcctttcttcatgttttgcaatttatgtagttg |
6824565 |
T |
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| Q |
210 |
atattatattatgtaaagtatggaatgattttatttcaattcgatgacaaggaaggtgtatttagagtttggggtagtaagaactagtaaacctcttggt |
309 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6824566 |
-----atattatgtaaagtatggaatgatcttatttcaattcgatgacaaggaaggtgtatttagattttggggtagtaagaactagtaaacctcttggt |
6824660 |
T |
|
| Q |
310 |
cctagctcaacatattaagcccaagttca |
338 |
Q |
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| T |
6824661 |
cctagctcaacatattaagcccatgttca |
6824689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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