View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14266_high_1 (Length: 534)
Name: NF14266_high_1
Description: NF14266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14266_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 23 - 518
Target Start/End: Original strand, 52583719 - 52584223
Alignment:
| Q |
23 |
cggagtcacaggacaaggtgatacaagcgatgcaataccaccagatttcttagcacgaataataaaggaagtggtattcctaggagcataaggagcaaat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583719 |
cggagtcacaggacaaggtgatacaagcgatgcaataccaccagatttcttagcacgaataataaaggaagtggtattcctaggagcataaggagcaaat |
52583818 |
T |
|
| Q |
123 |
ctagcattaaacttcttcttagggtaaaacttacgcgctttcaaacgattctgagattgtaactcatgaagagttggtggttggtaaccaacaatattat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583819 |
ctagcattaaacttcttcttagggtaaaacttacgcgctttcaaacgattctgagattgtaactcatgaagagttggtggttggtaaccaacaatattat |
52583918 |
T |
|
| Q |
223 |
ttggaatacccatggaaatagtctggttgggtttttccattctcctaatatctttgcgcttgtcgctaaccttctttcccttccagttattgttattatt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583919 |
ttggaatacccatggaaatagtctggttgggtttatccattctcctaatatctttgcgcttgtcgctaaccttctttcccttccagttattgttattatt |
52584018 |
T |
|
| Q |
323 |
acttcttcccggcttcaaattaggaaaattatgtttgatattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagaccaaaccttg |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584019 |
acttcttcccggcttcaaattaggaaaattatgtttgatattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagaccaaaccttg |
52584118 |
T |
|
| Q |
423 |
ttattatatccaccaccgccacgattctgggtcatcatc---------ggaggaggaagctgttgttgattctgactcatcatcttcatctgtggttggt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584119 |
ttattatatccaccaccgccacgattctgggtcatcatcggaggaggaggaggaggaagctgttgttgattctgactcatcatcttcatctgtggttggt |
52584218 |
T |
|
| Q |
514 |
gagag |
518 |
Q |
| |
|
||||| |
|
|
| T |
52584219 |
gagag |
52584223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 54108999 - 54109077
Alignment:
| Q |
361 |
tattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagaccaaaccttgttattatatccaccacc |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54108999 |
tattagggttctgaaatttcatgttaggatccagaggaagctgctgttgagaccaaaccttgttattatattcaccacc |
54109077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University