View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14266_high_3 (Length: 318)

Name: NF14266_high_3
Description: NF14266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14266_high_3
NF14266_high_3
[»] chr1 (6 HSPs)
chr1 (19-291)||(28719899-28720171)
chr1 (28-145)||(37996581-37996698)
chr1 (289-318)||(2352307-2352336)
chr1 (289-318)||(14281588-14281617)
chr1 (289-318)||(23398078-23398107)
chr1 (289-318)||(38830481-38830510)
[»] scaffold1089 (1 HSPs)
scaffold1089 (19-235)||(514-736)
[»] chr6 (13 HSPs)
chr6 (33-137)||(7819960-7820064)
chr6 (19-138)||(14435591-14435710)
chr6 (29-114)||(7815414-7815499)
chr6 (33-148)||(7805747-7805862)
chr6 (19-131)||(3254889-3255001)
chr6 (28-137)||(10416461-10416570)
chr6 (19-149)||(7872240-7872370)
chr6 (289-318)||(22880916-22880945)
chr6 (289-318)||(22898851-22898880)
chr6 (19-131)||(7818334-7818446)
chr6 (95-135)||(14438253-14438293)
chr6 (286-318)||(24949752-24949784)
chr6 (290-318)||(31971151-31971179)
[»] scaffold1377 (1 HSPs)
scaffold1377 (29-135)||(1344-1450)
[»] chr3 (5 HSPs)
chr3 (28-161)||(2467499-2467632)
chr3 (289-318)||(8243803-8243832)
chr3 (289-318)||(10049666-10049695)
chr3 (290-318)||(9440249-9440277)
chr3 (290-318)||(26999020-26999048)
[»] chr5 (3 HSPs)
chr5 (19-135)||(14308530-14308646)
chr5 (289-318)||(25027692-25027721)
chr5 (290-318)||(13144879-13144907)
[»] chr4 (9 HSPs)
chr4 (19-111)||(14018658-14018750)
chr4 (289-318)||(580532-580561)
chr4 (289-318)||(4758898-4758927)
chr4 (289-318)||(20688537-20688566)
chr4 (289-318)||(36099485-36099514)
chr4 (289-318)||(53621449-53621478)
chr4 (290-318)||(18135434-18135462)
chr4 (286-318)||(23125641-23125673)
chr4 (290-318)||(49122641-49122669)
[»] chr8 (3 HSPs)
chr8 (283-317)||(2339412-2339446)
chr8 (290-318)||(2229191-2229219)
chr8 (290-318)||(25848088-25848116)
[»] chr2 (4 HSPs)
chr2 (289-318)||(6761463-6761492)
chr2 (290-318)||(16241388-16241416)
chr2 (290-318)||(25892065-25892093)
chr2 (290-318)||(44737403-44737431)
[»] chr7 (3 HSPs)
chr7 (289-317)||(7107752-7107780)
chr7 (73-137)||(19316579-19316643)
chr7 (290-318)||(23248789-23248817)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 28720171 - 28719899
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28720171 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 28720072  T
Q  119 ttacaagaaatgacaattgaggttactactagctccttaaatgaaatgcaaaagcatgaaataatagaagaactatccagttgtccaaagatgtctcaag 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28720071 ttacaagaaatgacaattgaggttactactagctcctcaaatgaaatgcaaaagcatgaaataatagaagaactatccagttgtccaaagatgtctcaag 28719972  T
Q  219 gatgtaaacttacattttgaatttattaagtgactagatcatcagtgnnnnnnnagttggcggtttgatgata 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  28719971 gatgtaaacttacattttgaatttattaagtgactagatcatcagtgtttttttagttggcggtttgatgata 28719899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 37996698 - 37996581
Alignment:
Q  28 gtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaa 127  Q
    ||||||||| || ||||||||||||||||| |||||||||||||   ||||||| ||||||||||  |||||| |||| ||||| || |||||||||||     
T  37996698 gtctcacctaagatcatgtactattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagac 37996599  T
Q  128 atgacaattgaggttact 145  Q
    |||| ||| || ||||||    
T  37996598 atgagaatcgaagttact 37996581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 2352307 - 2352336
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  2352307 atactacctccggtcctatttacaagagac 2352336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 14281588 - 14281617
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  14281588 atactacctccggtcctatttacaagagac 14281617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 23398078 - 23398107
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  23398078 atactacctccggtcctatttacaagagac 23398107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 38830481 - 38830510
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  38830481 atactacctccggtcctatttacaagagac 38830510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 736 - 514
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    |||||||  |||||||||||| |||||||| |||||||| |||||||| ||||  ||| | || | ||||||||  ||||||||||||||||| ||  ||    
T  736 atgtgtttcgtctcacctcagatcatgtacaattttaaactttgaaggatcggctaataaccttctatttgcaacatatattctgcagaatgctaggttt 637  T
Q  119 ttacaagaaatgacaattgaggttactactagctccttaaatgaaatgc------aaaagcatgaaataatagaagaactatccagttgtccaaagatgt 212  Q
    |||||||| |||||||| || ||||||||| |||||| |||||||||||      ||| |  |||||| ||||||||| | |||  |||||||| ||| |    
T  636 ttacaagatatgacaatcgacgttactactcgctcctcaaatgaaatgcttttagaaaggagtgaaattatagaagaattgtcctcttgtccaaggattt 537  T
Q  213 ctcaaggatgtaaacttacattt 235  Q
    ||| || ||||||||||||||||    
T  536 ctccagcatgtaaacttacattt 514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 7820064 - 7819960
Alignment:
Q  33 acctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaatgac 132  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || |  ||||||||   |||||||||||||||||    
T  7820064 acctcagatcatgtactattttaaactttgaaggctcggaaaatgatcttcgatttgcaaaatatgttttaaagaatgcgtatcttttacaagaaatgac 7819965  T
Q  133 aattg 137  Q
    |||||    
T  7819964 aattg 7819960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 14435710 - 14435591
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    |||||||  |||||||||||| |||||||| |||||||| |||||||| |||| |||||| || | ||||||||| |||||  ||||||||||||| |||    
T  14435710 atgtgtttcgtctcacctcagatcatgtacaattttaaactttgaaggatcggcaaatgaccttcaatttgcaaaatatatattgcagaatgcgaggctt 14435611  T
Q  119 ttacaagaaatgacaattga 138  Q
    |||||||| |||||||||||    
T  14435610 ttacaagatatgacaattga 14435591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 7815414 - 7815499
Alignment:
Q  29 tctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgag 114  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||||| |||||| |||| |||||| |||||||||||||    
T  7815414 tctcacctcagatcatgtactattttaaacttacaaggctcggaaaatgatcttcgatttacaaaatatattttgcagaatgcgag 7815499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 7805862 - 7805747
Alignment:
Q  33 acctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaatgac 132  Q
    ||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||| |  |||||| ||| |||||||| || ||||     
T  7805862 acctcagatcatgtactattttaaactttgacggctcggataatgatcttcgatttgcaaaatatattttaaagaatgggagtcttttacaggagatgag 7805763  T
Q  133 aattgaggttactact 148  Q
    |||||  |||||||||    
T  7805762 aattggtgttactact 7805747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 3255001 - 3254889
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    |||||||  ||| |||||||  |||||||| ||||||||  |||| | ||||| ||||||||| | ||||||||| |||||| ||||||||||||| |||    
T  3255001 atgtgttttgtcacacctcacatcatgtaccattttaaaccttgatgcctcggcaaatgatcttcaatttgcaaaatatattttgcagaatgcgagtctt 3254902  T
Q  119 ttacaagaaatga 131  Q
    |||||||| ||||    
T  3254901 ttacaagacatga 3254889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 10416461 - 10416570
Alignment:
Q  28 gtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaa 127  Q
    |||| |||| || ||||||||||| ||||| || || ||||||||||||||||| | ||||||||| |||||| | |||||  || | |||||||||||     
T  10416461 gtctaaccttagatcatgtactatattaaacttcgatggctcggaaaatgatcttcaatttgcaaaatatattttacagaaatcgggtcttttacaagac 10416560  T
Q  128 atgacaattg 137  Q
    ||||||||||    
T  10416561 atgacaattg 10416570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 7872240 - 7872370
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    |||||||  ||||||||| || ||||||||||||||||| ||  | ||||| | ||||||||| ||||||||||  |||||| ||||||||||  | |||    
T  7872240 atgtgtttcgtctcaccttagatcatgtactattttaaacttccatggctcagcaaatgatcttcgatttgcaacatatattttgcagaatgcaggtctt 7872339  T
Q  119 ttacaagaaatgacaattgaggttactacta 149  Q
    ||| |||| |||| ||| |  ||||||||||    
T  7872340 ttagaagacatgaaaatcggcgttactacta 7872370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 22880916 - 22880945
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  22880916 atactacctccggtcctatttacaagagac 22880945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 22898851 - 22898880
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  22898851 atactacctccggtcctatttacaagagac 22898880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 7818334 - 7818446
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    |||||||  |||| ||||||  ||||||||||||||||| ||| |||||| |  |||| |||| |||||| |||  |||||| || |||||| ||| |||    
T  7818334 atgtgtttcgtctaacctcaaatcatgtactattttaaactttcaaggcttgataaattatcttcgatttacaacatatattttgaagaatgtgaggctt 7818433  T
Q  119 ttacaagaaatga 131  Q
    |||| ||| ||||    
T  7818434 ttacgagacatga 7818446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 14438293 - 14438253
Alignment:
Q  95 tatattctgcagaatgcgagacttttacaagaaatgacaat 135  Q
    |||||| ||||||||||||| ||||||||||| ||||||||    
T  14438293 tatattttgcagaatgcgaggcttttacaagatatgacaat 14438253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 24949784 - 24949752
Alignment:
Q  286 atgatactacctccggtcctatttacaagagac 318  Q
    |||||||| ||||||||||||||||||||||||    
T  24949784 atgatactccctccggtcctatttacaagagac 24949752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 31971179 - 31971151
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  31971179 tactacctccggtcctatttacaagagac 31971151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 1450 - 1344
Alignment:
Q  29 tctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaa 128  Q
    ||||||||||| || ||||| |||||||| |||||||||||||  ||| |||| ||||||||||  |||||| ||||||||||||| ||||||||||| |    
T  1450 tctcacctcagatcctgtacaattttaaactttgaaggctcggccaataatcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagata 1351  T
Q  129 tgacaat 135  Q
    |||||||    
T  1350 tgacaat 1344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 2467632 - 2467499
Alignment:
Q  28 gtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaa 127  Q
    ||||||||| |  |||||||| ||||||||||||||||| || | ||||||||| ||||||||||  |||||  ||||||||| |||| |||||||| |     
T  2467632 gtctcaccttatatcatgtacaattttaaattttgaagggtctgcaaatgatcttcgatttgcaacatatatattgcagaatgggagaattttacaaaac 2467533  T
Q  128 atgacaattgaggttactactagctccttaaatg 161  Q
    |||||||| || ||||| |||||||||| |||||    
T  2467532 atgacaatcgacgttacaactagctcctcaaatg 2467499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 8243832 - 8243803
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  8243832 atactacctccggtcctatttacaagagac 8243803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 10049666 - 10049695
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  10049666 atactacctccggtcctatttacaagagac 10049695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 9440277 - 9440249
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  9440277 tactacctccggtcctatttacaagagac 9440249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 26999020 - 26999048
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  26999020 tactacctccggtcctatttacaagagac 26999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 14308530 - 14308646
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagactt 118  Q
    |||||||  ||| |||||||| ||||||||||||||||| ||| || |||  | ||||||||| ||||||||||  |||||| ||||||| || |||| |    
T  14308530 atgtgttttgtcacacctcagatcatgtactattttaaactttcaatgctatggaaatgatcttcgatttgcaacatatattttgcagaacgcaagacgt 14308629  T
Q  119 ttacaagaaatgacaat 135  Q
    || ||||| ||||||||    
T  14308630 ttgcaagacatgacaat 14308646  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 25027692 - 25027721
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  25027692 atactacctccggtcctatttacaagagac 25027721  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 13144879 - 13144907
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  13144879 tactacctccggtcctatttacaagagac 13144907  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 14018658 - 14018750
Alignment:
Q  19 atgtgttgagtctcacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgc 111  Q
    |||||||  |||||| || || ||||||||||||||||| |||||   ||||| ||||||||| ||||||||||| || ||| ||||||||||    
T  14018658 atgtgtttcgtctcatcttagatcatgtactattttaaactttgataactcggcaaatgatcttcgatttgcaaaatacattttgcagaatgc 14018750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 580561 - 580532
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  580561 atactacctccggtcctatttacaagagac 580532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 4758927 - 4758898
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  4758927 atactacctccggtcctatttacaagagac 4758898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 20688566 - 20688537
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  20688566 atactacctccggtcctatttacaagagac 20688537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 36099485 - 36099514
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  36099485 atactacctccggtcctatttacaagagac 36099514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 53621478 - 53621449
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  53621478 atactacctccggtcctatttacaagagac 53621449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 18135462 - 18135434
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  18135462 tactacctccggtcctatttacaagagac 18135434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 23125641 - 23125673
Alignment:
Q  286 atgatactacctccggtcctatttacaagagac 318  Q
    |||||||| ||||||||||||||||||||||||    
T  23125641 atgatactccctccggtcctatttacaagagac 23125673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 49122669 - 49122641
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  49122669 tactacctccggtcctatttacaagagac 49122641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 2339446 - 2339412
Alignment:
Q  283 ttgatgatactacctccggtcctatttacaagaga 317  Q
    ||||||||||| |||||||||||||||||||||||    
T  2339446 ttgatgatactccctccggtcctatttacaagaga 2339412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 2229219 - 2229191
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  2229219 tactacctccggtcctatttacaagagac 2229191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 25848116 - 25848088
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  25848116 tactacctccggtcctatttacaagagac 25848088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 6761463 - 6761492
Alignment:
Q  289 atactacctccggtcctatttacaagagac 318  Q
    ||||||||||||||||||||||||||||||    
T  6761463 atactacctccggtcctatttacaagagac 6761492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 16241416 - 16241388
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  16241416 tactacctccggtcctatttacaagagac 16241388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 25892093 - 25892065
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  25892093 tactacctccggtcctatttacaagagac 25892065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 44737431 - 44737403
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  44737431 tactacctccggtcctatttacaagagac 44737403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 7107780 - 7107752
Alignment:
Q  289 atactacctccggtcctatttacaagaga 317  Q
    |||||||||||||||||||||||||||||    
T  7107780 atactacctccggtcctatttacaagaga 7107752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 19316643 - 19316579
Alignment:
Q  73 aaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaatgacaattg 137  Q
    ||||||| | ||||||||||| |||||||| ||||| ||| |  |||||||||| ||||||||||    
T  19316643 aaatgatattcgatttgcaaaatatattctccagaacgcgggtattttacaagacatgacaattg 19316579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 318
Target Start/End: Complemental strand, 23248817 - 23248789
Alignment:
Q  290 tactacctccggtcctatttacaagagac 318  Q
    |||||||||||||||||||||||||||||    
T  23248817 tactacctccggtcctatttacaagagac 23248789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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