View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14266_high_6 (Length: 275)

Name: NF14266_high_6
Description: NF14266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14266_high_6
NF14266_high_6
[»] chr4 (9 HSPs)
chr4 (18-264)||(18676897-18677143)
chr4 (34-264)||(18721411-18721641)
chr4 (29-264)||(18726330-18726567)
chr4 (29-264)||(18728833-18729068)
chr4 (34-264)||(18696740-18696970)
chr4 (44-264)||(18686946-18687166)
chr4 (34-264)||(18652815-18653045)
chr4 (34-150)||(18682168-18682286)
chr4 (193-264)||(18682099-18682170)
[»] chr6 (38 HSPs)
chr6 (43-147)||(27681607-27681711)
chr6 (43-147)||(27608529-27608633)
chr6 (43-147)||(27674983-27675087)
chr6 (43-149)||(28795059-28795165)
chr6 (43-147)||(27715909-27716013)
chr6 (43-149)||(26638052-26638158)
chr6 (43-149)||(26744018-26744124)
chr6 (43-147)||(27696000-27696104)
chr6 (109-149)||(27602130-27602170)
chr6 (182-264)||(26649265-26649347)
chr6 (182-264)||(26755233-26755315)
chr6 (182-264)||(27662664-27662746)
chr6 (43-149)||(28789035-28789141)
chr6 (43-147)||(26145647-26145751)
chr6 (34-149)||(26658623-26658738)
chr6 (34-149)||(26764594-26764709)
chr6 (34-149)||(26886750-26886865)
chr6 (43-153)||(31287226-31287339)
chr6 (109-147)||(26805217-26805255)
chr6 (182-264)||(26805290-26805372)
chr6 (109-147)||(26961827-26961865)
chr6 (109-144)||(25076609-25076644)
chr6 (109-147)||(25547696-25547734)
chr6 (109-147)||(26649192-26649230)
chr6 (109-147)||(26755160-26755198)
chr6 (109-147)||(26851226-26851264)
chr6 (109-147)||(26952334-26952372)
chr6 (109-147)||(26980125-26980163)
chr6 (43-100)||(26625779-26625836)
chr6 (112-149)||(26625851-26625888)
chr6 (43-100)||(26731756-26731813)
chr6 (112-149)||(26731828-26731865)
chr6 (43-84)||(26961761-26961802)
chr6 (109-146)||(27662782-27662819)
chr6 (111-151)||(26826607-26826647)
chr6 (182-214)||(26851299-26851331)
chr6 (182-214)||(26980198-26980230)
chr6 (182-214)||(27602065-27602097)
[»] chr8 (2 HSPs)
chr8 (43-144)||(29271251-29271352)
chr8 (109-149)||(22023992-22024032)
[»] scaffold0419 (1 HSPs)
scaffold0419 (43-149)||(10185-10291)
[»] scaffold0277 (2 HSPs)
scaffold0277 (43-149)||(2095-2201)
scaffold0277 (43-149)||(11058-11164)
[»] scaffold0349 (1 HSPs)
scaffold0349 (43-147)||(15932-16036)
[»] chr1 (2 HSPs)
chr1 (109-151)||(26138716-26138758)
chr1 (34-147)||(265740-265853)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 18677143 - 18676897
Alignment:
Q  18 catctcaattgttgccatctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaa 117  Q
    |||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  18677143 catctccattattgcaatctcccatatgaaggtctccaaatagttctcaagttgtgtgttaatgtgaaatttctagacttatcctttggcaatttcaaaa 18677044  T
Q  118 ttcttcctgagtgccttagtgaatgtcaccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaa 217  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||  ||||||||  |||     ||||||||||||||||||||||||||||||||||||    
T  18677043 ttcttcccgagtgccttaatgaatgtcaccgtatgaggaccctcggattgaattccaacgagcatcttgaggaaattagagggtttccaccgaatctcaa 18676944  T
Q  218 atatcttgatgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    |||| |||| ||||| ||||||||||||||||||| |||||||||||    
T  18676943 atattttgaagcattaagatgtaaatcattgagttcctcaagtagaa 18676897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 34 - 264
Target Start/End: Complemental strand, 18721641 - 18721411
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  18721641 atctccaatatgaatgtctccaaatagttctcaagtcgtgtgttaatgtgaaatttctagacttatcctttggctatttcaaaattcttcctgagtgcct 18721542  T
Q  134 tagtgaatgtcaccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattc 233  Q
    || ||||||||||||||||  |||||||| ||||||||  | |     ||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  18721541 taatgaatgtcaccttatggagaccctcatattgaatttaagcaagcatcttgaggaaattagagggtttccaccgaatctcaaatatcttgaagcatta 18721442  T
Q  234 agatgtaaatcattgagtttctcaagtagaa 264  Q
      ||||||||||||||||| |||||||||||    
T  18721441 gaatgtaaatcattgagttcctcaagtagaa 18721411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 18726567 - 18726330
Alignment:
Q  29 ttgccatctcccatatgaatgtctccaaatagttctcaagttgtgtgt--taatgtgaaacggctagacttatcctttggctatttcaaaattcttcctg 126  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||   |||||||||||||||||| |||||||||||||||| |    
T  18726567 ttgcaatctcccatatgaatgtctccaaatagttctcaagttgtgtgtgttaatgtgaaatttctagacttatcctttggcaatttcaaaattcttcccg 18726468  T
Q  127 agtgccttagtgaatgtcaccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaaatatcttga 226  Q
    |||||||||||||||||||||||||||||||||||  ||||||||  |||     |||||||||||||||||||||||||||||||||||||| ||||      
T  18726467 agtgccttagtgaatgtcaccttatgaggaccctcctattgaattttaacgagcatcttgaggaaattagagggtttccaccgaatctcaaatgtcttcg 18726368  T
Q  227 tgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||||  |||||||||||||||||| ||||| |||||    
T  18726367 tgcattaggatgtaaatcattgagttcctcaaatagaa 18726330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 18729068 - 18728833
Alignment:
Q  29 ttgccatctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgag 128  Q
    |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||   ||||||||| |||||||  | ||||||||||||||||||    
T  18729068 ttgcaatctcccatatgaatgtctccaaatagttctcaagtggtgtattaatgtgaaatttctagacttaacctttggtcagttcaaaattcttcctgag 18728969  T
Q  129 tgccttagtgaatgtcaccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaaatatcttgatg 228  Q
    |||||||||||||||||||||||||||||||||  ||||||||  |||     |||||||||||||||||||||||||||||||||||||| ||||||||    
T  18728968 tgccttagtgaatgtcaccttatgaggaccctcctattgaattccaaccagcatcttgaggaaattagagggtttccaccgaatctcaaatgtcttgatg 18728869  T
Q  229 cattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||   ||||||||||||||||| ||||| |||||    
T  18728868 catttgaatgtaaatcattgagttcctcaactagaa 18728833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 264
Target Start/End: Complemental strand, 18696970 - 18696740
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||| |||||||| ||||| | |||||||||||||| ||||||||    
T  18696970 atctcccatatgaatgtctccaaatagttctcaagtcgtgtgttaatgtgaaatatctaaacttatcccttggcaaattcaaaattcttcccgagtgcct 18696871  T
Q  134 tagtgaatgtcaccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattc 233  Q
    |||||||||||||||| |||||||||||  |||| |||  |||     ||||||||||||||||||| ||||||||||||||||||||||||||||||      
T  18696870 tagtgaatgtcaccttctgaggaccctcctattggatttcaacaggcatcttgaggaaattagagggcttccaccgaatctcaaatatcttgatgcatat 18696771  T
Q  234 agatgtaaatcattgagtttctcaagtagaa 264  Q
     |||||||||||||||||| |||||||||||    
T  18696770 cgatgtaaatcattgagttcctcaagtagaa 18696740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 44 - 264
Target Start/End: Complemental strand, 18687166 - 18686946
Alignment:
Q  44 tgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatgt 143  Q
    ||||||||||||||||||||| |||| ||||||||||||||||   ||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  18687166 tgaatgtctccaaatagttcttaagtcgtgtgttaatgtgaaatttctaaacttatcctttggcaatttcaaaattcttcccgagtgccttagtgaatgt 18687067  T
Q  144 caccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattcagatgtaaat 243  Q
    |||||| |||||||||||  |||| |||  ||| |   ||||||||||||||||||| ||||||||||||||||||||||||||||||     |||||||    
T  18687066 caccttctgaggaccctcctattggatttcaacacgcatcttgaggaaattagagggattccaccgaatctcaaatatcttgatgcatatgattgtaaat 18686967  T
Q  244 cattgagtttctcaagtagaa 264  Q
    ||||||||| |||||||||||    
T  18686966 cattgagttcctcaagtagaa 18686946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 264
Target Start/End: Complemental strand, 18653045 - 18652815
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||  |||||||  | || |||||||||||||||| |||| |||    
T  18653045 atctcccatatgaatgtctccaaatagttctcaagtcgtgtgttaatgtgaaatttctaagcttatcccgttgcaatttcaaaattcttcccgagtacct 18652946  T
Q  134 tagtgaatgtcaccttatgaggaccctcacattgaattggaactccggtcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattc 233  Q
    || |||||||||||||||||||||||||  ||||||||  |||  |  ||| |||||||||||||||||||||||||||||||||||| |||| |||||     
T  18652945 taatgaatgtcaccttatgaggaccctcgtattgaatttcaacgaccatctagaggaaattagagggtttccaccgaatctcaaatattttgaagcatta 18652846  T
Q  234 agatgtaaatcattgagtttctcaagtagaa 264  Q
      ||||||||||||||||| |||||||||||    
T  18652845 ttatgtaaatcattgagttcctcaagtagaa 18652815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 150
Target Start/End: Complemental strand, 18682286 - 18682168
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagt--tgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgc 131  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||   |||||||||||||||||| |||||||||||||||| ||||||    
T  18682286 atctcccatatgaatgtctccaaatagttctcaagtcgtgtgtgttaatgtgaaatttctagacttatcctttggcaatttcaaaattcttcccgagtgc 18682187  T
Q  132 cttagtgaatgtcacctta 150  Q
    |||||||||||||||||||    
T  18682186 cttagtgaatgtcacctta 18682168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 18682170 - 18682099
Alignment:
Q  193 ttagagggtttccaccgaatctcaaatatcttgatgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||||||||||||||||||||||||| ||||  ||||||  |||||||||||||||||| ||||| |||||    
T  18682170 ttagagggtttccaccgaatctcaaatgtcttcgtgcattaggatgtaaatcattgagttgctcaaatagaa 18682099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 27681607 - 27681711
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||||||||||||| |||||||||| ||| ||  ||||||||||| ||| || |||||||||||||||||||||||||| |||||||    
T  27681607 atgaatgtctcccaatagttctcaagtggtgtgttaatatgacacatctagacttatcatttagcaatttcaaaattcttcctgagtgccttcgtgaatg 27681706  T
Q  143 tcacc 147  Q
    |||||    
T  27681707 tcacc 27681711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 27608633 - 27608529
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| || ||||||||||| | | ||||||||||| | | || ||||||||||||||||||||||||||||||||||    
T  27608633 atgaatgtctcccaatacttctcaagtggtttgttaatgtgacatgtctagacttatcatatagcaatttcaaaattcttcctgagtgccttagtgaatg 27608534  T
Q  143 tcacc 147  Q
    |||||    
T  27608533 tcacc 27608529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 27675087 - 27674983
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||| ||||||||||||||| |||| ||||||||||||| ||  ||||||||||||   |  | ||||||||||||||||||||||||||||||||||    
T  27675087 atgaatatctccaaatagttcttaagtggtgtgttaatgtggaattgctagacttatcacataacaatttcaaaattcttcctgagtgccttagtgaatg 27674988  T
Q  143 tcacc 147  Q
    |||||    
T  27674987 tcacc 27674983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 28795059 - 28795165
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||  |||||||||||| |    | |||||||| || ||||||||||||||||||||||    
T  28795059 atgaatgtctcccaatatttctcaagtggtgtgttaatgtgaaattgctagacttatcatggaacaatttcaaatttattcctgagtgccttagtgaatg 28795158  T
Q  143 tcacctt 149  Q
    | |||||    
T  28795159 ttacctt 28795165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 27716013 - 27715909
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| || ||||||||||| |||||||||| ||| |   ||| ||||||  | | || ||||||||||||||||||||||||||||||||||    
T  27716013 atgaatgtctccgaagagttctcaagtggtgtgttaatatgacatctctaaacttattatatagcaatttcaaaattcttcctgagtgccttagtgaatg 27715914  T
Q  143 tcacc 147  Q
    |||||    
T  27715913 tcacc 27715909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 26638052 - 26638158
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| ||||| ||||||||||  | || |||||||   |  | |||||||||||||||||||||||||||||| |||    
T  26638052 atgaatgtctcccaatacttctcaagtggtgtgctaatgtgaaattgttatacttatctggtaacaatttcaaaattcttcctgagtgccttagtgtatg 26638151  T
Q  143 tcacctt 149  Q
    |||||||    
T  26638152 tcacctt 26638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 26744018 - 26744124
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| ||||| ||||||||||  | || |||||||   |  | |||||||||||||||||||||||||||||| |||    
T  26744018 atgaatgtctcccaatacttctcaagtggtgtgctaatgtgaaattgttatacttatctggtaacaatttcaaaattcttcctgagtgccttagtgtatg 26744117  T
Q  143 tcacctt 149  Q
    |||||||    
T  26744118 tcacctt 26744124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 27696104 - 27696000
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| |||||||||| ||| |   ||||| ||||| | | || |||||||||||||||| ||||||||||||||| |    
T  27696104 atgaatgtctcccaatacttctcaagtggtgtgttaatatgacatatctagatttatcatatagcgatttcaaaattcttccagagtgccttagtgaaag 27696005  T
Q  143 tcacc 147  Q
    |||||    
T  27696004 tcacc 27696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 27602170 - 27602130
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacctt 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27602170 atttcaaaattcttcctgagtgccttagtgaatgtcacctt 27602130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 26649265 - 26649347
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||||||||||||| ||| ||||||| ||||| ||||  |||  |||||| |||||| |||||||||||| |||||||||||    
T  26649265 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaa 26649347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 26755233 - 26755315
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||||||||||||| ||| ||||||| ||||| ||||  |||  |||||| |||||| |||||||||||| |||||||||||    
T  26755233 tcttgaggaaattagggggattccaccaaatcttaaatggctttctgcattgagatgtgaatcattgagttcctcaagtagaa 26755315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 27662746 - 27662664
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||||||||||||||||| ||||||| ||||| | | ||||| |||||    |||||||||||||||||| |||||||||||    
T  27662746 tcttgaggaaattagagggattccacccaatctaacaaatctttatgcagaaggatgtaaatcattgagttcctcaagtagaa 27662664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 28789035 - 28789141
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| ||||||| |||||| |   ||||||||||| |    | |||||||| || ||||||||||||||||||||||    
T  28789035 atgaatgtctcccaatatttctcaagtggtgtgtttatgtgacatatctagacttatcatggaacaatttcaaacttattcctgagtgccttagtgaatg 28789134  T
Q  143 tcacctt 149  Q
    | |||||    
T  28789135 ttacctt 28789141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 26145647 - 26145751
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| || ||||||||||| |   |||||||||||      |||||||| ||||||||| ||||||||| |||||||    
T  26145647 atgaatgtctcccaatacttctcaagtggtttgttaatgtgacatttctagacttatcggagaactatttcacaattcttcccgagtgccttggtgaatg 26145746  T
Q  143 tcacc 147  Q
    |||||    
T  26145747 tcacc 26145751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 26658623 - 26658738
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    ||||| || |||| ||||| | |||| ||||||||| ||||||||||||||||   ||| |||||||      | ||||||||||||| || ||||||||    
T  26658623 atctctcagatgactgtcttccaatacttctcaagtggtgtgttaatgtgaaatatctaaacttatcaaagaacaatttcaaaattctacccgagtgcct 26658722  T
Q  134 tagtgaatgtcacctt 149  Q
    ||||||||||||||||    
T  26658723 tagtgaatgtcacctt 26658738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 26764594 - 26764709
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    ||||| || |||| ||||| | |||| ||||||||| ||||||||||||||||   ||| |||||||      | ||||||||||||| || ||||||||    
T  26764594 atctctcagatgactgtcttccaatacttctcaagtggtgtgttaatgtgaaatatctaaacttatcaaagaacaatttcaaaattctacccgagtgcct 26764693  T
Q  134 tagtgaatgtcacctt 149  Q
    ||||||||||||||||    
T  26764694 tagtgaatgtcacctt 26764709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 26886750 - 26886865
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    ||||| ||| ||||||||| | |||  ||||||||| || ||||||||||||||  |||||||||||      | |||||||||||||||| ||||||||    
T  26886750 atctctcatttgaatgtcttccaatgcttctcaagtggtttgttaatgtgaaacatctagacttatcaaagaacaatttcaaaattcttcccgagtgcct 26886849  T
Q  134 tagtgaatgtcacctt 149  Q
    ||  ||||||||||||    
T  26886850 taaggaatgtcacctt 26886865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 31287226 - 31287339
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggct---atttcaaaattcttcctgagtgccttagtga 139  Q
    |||||||| | | |||| ||||||||| || ||||||||||||| |||||||||||||   |  ||   ||||||| |||||||| ||||| |||| |||    
T  31287226 atgaatgtttaccaatacttctcaagtggtttgttaatgtgaaaaggctagacttatcgcataacttcaatttcaatattcttcccgagtgtcttaatga 31287325  T
Q  140 atgtcaccttatga 153  Q
    ||||||||||||||    
T  31287326 atgtcaccttatga 31287339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26805217 - 26805255
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  26805217 atttcaaaattcttcctgagtgtcttagtgaatgtcacc 26805255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Original strand, 26805290 - 26805372
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatctcaaatatcttgatgcattcagatgtaaatcattgagtttctcaagtagaa 264  Q
    ||||||||||||||||||| ||||||||||||| ||| | |||  ||||    ||||||||||||||||||  ||||||||||    
T  26805290 tcttgaggaaattagagggattccaccgaatctaaaagagctttctgcagaaggatgtaaatcattgagttcatcaagtagaa 26805372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26961827 - 26961865
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  26961827 atttcaaaattcttcccgagtgccttagtgaatgtcacc 26961865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 25076609 - 25076644
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtc 144  Q
    |||||||||||||||| |||||||||||||||||||    
T  25076609 atttcaaaattcttcccgagtgccttagtgaatgtc 25076644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 25547696 - 25547734
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  25547696 atttcacaattcttcctgagtgccttagcgaatgtcacc 25547734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26649192 - 26649230
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  26649192 atttcaaaattcttcccgagttccttagtgaatgtcacc 26649230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26755160 - 26755198
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  26755160 atttcaaaattcttcccgagttccttagtgaatgtcacc 26755198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26851226 - 26851264
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  26851226 atttaaaaattcttcccgagtgccttagtgaatgtcacc 26851264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26952334 - 26952372
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  26952334 atttcaaaattcttcccgagtgccttagtgaatgccacc 26952372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 26980125 - 26980163
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacc 147  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  26980125 atttcaaaattctacctgagtgccttaatgaatgtcacc 26980163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 26625779 - 26625836
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatc 100  Q
    |||||| ||||| |||| ||||||||| || ||||||||||||||  |||||||||||    
T  26625779 atgaatatctcccaataattctcaagtggtttgttaatgtgaaacatctagacttatc 26625836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 26625851 - 26625888
Alignment:
Q  112 tcaaaattcttcctgagtgccttagtgaatgtcacctt 149  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  26625851 tcaaaattcttcctgaatgccttaatgaatgtcacctt 26625888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 26731756 - 26731813
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatc 100  Q
    |||||| ||||| |||| ||||||||| || ||||||||||||||  |||||||||||    
T  26731756 atgaatatctcccaataattctcaagtggtttgttaatgtgaaacatctagacttatc 26731813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 26731828 - 26731865
Alignment:
Q  112 tcaaaattcttcctgagtgccttagtgaatgtcacctt 149  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  26731828 tcaaaattcttcctgaatgccttaatgaatgtcacctt 26731865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 26961761 - 26961802
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtga 84  Q
    |||||||||||| |||| |||||||||||| |||||||||||    
T  26961761 atgaatgtctcccaatacttctcaagttgtttgttaatgtga 26961802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 27662819 - 27662782
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcac 146  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  27662819 atttcaaaattcttcccaagtgccttagtgaatgtcac 27662782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 26826607 - 26826647
Alignment:
Q  111 ttcaaaattcttcctgagtgccttagtgaatgtcaccttat 151  Q
    ||||||||| ||||||||||||||||||||  |||||||||    
T  26826607 ttcaaaattattcctgagtgccttagtgaacttcaccttat 26826647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 26851299 - 26851331
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatct 214  Q
    ||||||||||||||||||| |||||||||||||    
T  26851299 tcttgaggaaattagagggattccaccgaatct 26851331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 26980198 - 26980230
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatct 214  Q
    ||||||||||||||||||||||||||| |||||    
T  26980198 tcttgaggaaattagagggtttccaccaaatct 26980230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 27602097 - 27602065
Alignment:
Q  182 tcttgaggaaattagagggtttccaccgaatct 214  Q
    ||||||||||||||||||||||||||| |||||    
T  27602097 tcttgaggaaattagagggtttccaccaaatct 27602065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 29271352 - 29271251
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| |||||||||||||| |   ||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  29271352 atgaatgtctcccaatacttctcaagtggtgtgttaatgtgacatatctagacttatcatttaactatttcaaaattcttcctgagtgccttagtgaatg 29271253  T
Q  143 tc 144  Q
    ||    
T  29271252 tc 29271251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 22023992 - 22024032
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcacctt 149  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  22023992 atttcaaaattcttcccgagtgccttaatgaatgtcacctt 22024032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 10185 - 10291
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||  ||||||||||||      | |||||||| || ||||||||||||||||||||||    
T  10185 atgaatgtctcccaatatttctcaagtggtgtgttaatgtgaaattgctagacttatcaaggaacaatttcaaacttattcctgagtgccttagtgaatg 10284  T
Q  143 tcacctt 149  Q
    |||||||    
T  10285 tcacctt 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 2201 - 2095
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| |||||||||||||| |   ||||||||||| | |  | |||||||| || ||||||||||||||||||||||    
T  2201 atgaatgtctcccaatatttctcaagtggtgtgttaatgtgacatctctagacttatcatataacaatttcaaacttattcctgagtgccttagtgaatg 2102  T
Q  143 tcacctt 149  Q
    |||||||    
T  2101 tcacctt 2095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 149
Target Start/End: Complemental strand, 11164 - 11058
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| |||| ||||||||| ||||||| |||||| |   ||||||||||| |    | |||||||| || ||||||||||||||||||||||    
T  11164 atgaatgtctcccaatatttctcaagtggtgtgtttatgtgacatatctagacttatcatggaacaatttcaaacttattcctgagtgccttagtgaatg 11065  T
Q  143 tcacctt 149  Q
    | |||||    
T  11064 ttacctt 11058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 15932 - 16036
Alignment:
Q  43 atgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgccttagtgaatg 142  Q
    |||||||||||| || ||||||||||| |||||||||| ||| |   ||| ||||||  | | || ||||||||||||||||||||||||||||||||||    
T  15932 atgaatgtctccgaagagttctcaagtggtgtgttaatatgacatctctaaacttattatatagcaatttcaaaattcttcctgagtgccttagtgaatg 16031  T
Q  143 tcacc 147  Q
    |||||    
T  16032 tcacc 16036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 26138716 - 26138758
Alignment:
Q  109 atttcaaaattcttcctgagtgccttagtgaatgtcaccttat 151  Q
    |||| |||||||||||||||||||||| |||||||||||||||    
T  26138716 attttaaaattcttcctgagtgccttaatgaatgtcaccttat 26138758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 265853 - 265740
Alignment:
Q  34 atctcccatatgaatgtctccaaatagttctcaagttgtgtgttaatgtgaaacggctagacttatcctttggctatttcaaaattcttcctgagtgcct 133  Q
    ||||| || |||||||||||| |||| ||||||||| |||||||||||||| |   ||| |||||       || | ||||||| |||||||||||||||    
T  265853 atctctcagatgaatgtctcccaatacttctcaagtggtgtgttaatgtgatatatctaaacttaatgaagagcaagttcaaaactcttcctgagtgcct 265754  T
Q  134 tagtgaatgtcacc 147  Q
    ||||||||||||||    
T  265753 tagtgaatgtcacc 265740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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