View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14266_low_2 (Length: 356)
Name: NF14266_low_2
Description: NF14266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14266_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 9725209 - 9725555
Alignment:
| Q |
1 |
tggtccccacttacaaacatgagagttgccacaataaaagaaac-------gtgatgctttcttgtggnnnnnnnnnntcgctgaaaacagcatttacct |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||| ||| |
|
|
| T |
9725209 |
tggtccccacttacaaacatgagagttgccacaataaaagaaacaacggtcgtgatgctttcttgag--aaaaaaaaatcgctgaaaacaacattttcct |
9725306 |
T |
|
| Q |
94 |
attctttttctcacttattctccctccaccaatttctcttctttaaattcttcttctcacaccccactatcaactcaaattcaaactccattttcttttt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9725307 |
attctttttctcacttattctccctccaccaatttctcttctttagattcttcttctcacaccccactatcaactcaaattcaaactccattttcttttt |
9725406 |
T |
|
| Q |
194 |
caagttccttacaatgcggggtaacaaatatttaattttgcgaccaaagtggcagtaacaactaacagtgaaggatcattattgaaggagaatggagtat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9725407 |
caagttccttacaatgcggggtaacaaatatttaattttgcgaccaaagtggcagtaacaactaacagtgaaggatcattattgaaggagaatggagtat |
9725506 |
T |
|
| Q |
294 |
tattgtgatgttgcatgttgtggtgaatgtctaaacaccatgcaatttg |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
9725507 |
tattgtgatgttgcatgttgtggtgaatgtctacaaaccatgcaatttg |
9725555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University