View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14266_low_7 (Length: 238)

Name: NF14266_low_7
Description: NF14266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14266_low_7
NF14266_low_7
[»] chr8 (5 HSPs)
chr8 (18-225)||(5722336-5722543)
chr8 (110-225)||(5670314-5670429)
chr8 (99-225)||(5692077-5692203)
chr8 (18-114)||(5670072-5670168)
chr8 (18-77)||(5691949-5692008)
[»] chr7 (1 HSPs)
chr7 (25-75)||(13052616-13052666)
[»] chr4 (2 HSPs)
chr4 (25-74)||(164674-164723)
chr4 (25-75)||(103713-103763)
[»] scaffold0013 (2 HSPs)
scaffold0013 (25-75)||(92545-92595)
scaffold0013 (152-225)||(92678-92751)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 5722336 - 5722543
Alignment:
Q  18 ataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctgcannnnnnnaacagtaataatatattataaagaggaaatgtg 117  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||       ||| |||||||||||||||||||||||||||||    
T  5722336 ataaactatcccataatagatcttgtatcaaaggatggggatagtaaagatcttcctgcatttttttaacggtaataatatattataaagaggaaatgtg 5722435  T
Q  118 cacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  5722436 cacacacaaattgtggttaatcaaagataatacccctcacctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggag 5722535  T
Q  218 ttcttctc 225  Q
    ||||||||    
T  5722536 ttcttctc 5722543  T

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Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 5670314 - 5670429
Alignment:
Q  110 gaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5670314 gaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttct 5670413  T
Q  210 gtaaggagttcttctc 225  Q
    ||||||||||||||||    
T  5670414 gtaaggagttcttctc 5670429  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 5692077 - 5692203
Alignment:
Q  99 attataaagaggaaatgtgcacacacaaattgtggttaatcaaagataatacccctcacctttgcacatagatggcgtactttttgccaattaacttttt 198  Q
    ||||||||||||| ||||  ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5692077 attataaagaggatatgtaaacacacacattgtggttaatcagagataatactcctcacctttgcacatagatggcgtactttttgccaattaacttttt 5692176  T
Q  199 cataatgttctgtaaggagttcttctc 225  Q
    ||||| |||||||||||||||||||||    
T  5692177 cataaggttctgtaaggagttcttctc 5692203  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 5670072 - 5670168
Alignment:
Q  18 ataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctgcannnnnnnaacagtaataatatattataaagaggaaat 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  5670072 ataaactatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctgcatttttttaacagtaataatatattataaagaggaaat 5670168  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 5691949 - 5692008
Alignment:
Q  18 ataaaccatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctgca 77  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5691949 ataaactatcccatattagatcttgtatcaaaggatggggatagtaaagatcttcctgca 5692008  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 13052666 - 13052616
Alignment:
Q  25 atcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 75  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  13052666 atcccatatcagatcttgtatcaaaggatgaggatagtaaagatcttcctg 13052616  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 164723 - 164674
Alignment:
Q  25 atcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcct 74  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  164723 atcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct 164674  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 103763 - 103713
Alignment:
Q  25 atcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 75  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||||    
T  103763 atcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctg 103713  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 92545 - 92595
Alignment:
Q  25 atcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcctg 75  Q
    ||||||||||| |||||||||||||||||| |||||||| | |||||||||    
T  92545 atcccatattaaatcttgtatcaaaggatgaggatagtagatatcttcctg 92595  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 92678 - 92751
Alignment:
Q  152 cctcacctttgcacatagatggcgtactttttgccaattaactttttcataatgttctgtaaggagttcttctc 225  Q
    |||||||||||||||||| |||||| |||||| ||| ||||||||  ||||| |||  ||| | ||||||||||    
T  92678 cctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctc 92751  T

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