View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_high_20 (Length: 372)
Name: NF14267_high_20
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 9641605 - 9641259
Alignment:
| Q |
1 |
tttaccactttcattcatggttgctggaatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttat |
100 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641605 |
tttaccattttcattcatggttgctggtatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttat |
9641506 |
T |
|
| Q |
101 |
cattatgcttacatatgtcttggtgaagggtatttatacattcaccttctttacattcttaaattcttacattacataggggttgtcgactgcatagctt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641505 |
cactatgcttacatatgtcttggtgaagggtatttatacattcaccttctttacattcttaaattcttacattacataggggttgtcgactgcatagctt |
9641406 |
T |
|
| Q |
201 |
attagatatcaatttagagatgatattttgtgtataatgtttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641405 |
attagatatcaatttagagatgatattttgtgtataatgtttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagc |
9641306 |
T |
|
| Q |
301 |
tgctgtcgctcgtggcattacccctaatttggtatagtcttaatcta |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9641305 |
tgctgtcgctcgtggcattacccctaatttggtatagtcttaatcta |
9641259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 9658504 - 9658327
Alignment:
| Q |
1 |
tttaccactttcattcatggttgctggaatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9658504 |
tttaccactttcattcatggttgctggtatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttat |
9658405 |
T |
|
| Q |
101 |
cattatgcttacatatgtcttggtgaagggtatttatacattcaccttctttacattcttaaattcttacattacata |
178 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9658404 |
cattatgcttatatatgtcttggtgaagggtatttatacattcaccttctttacattcttaatttcttacattacata |
9658327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 9618353 - 9618197
Alignment:
| Q |
2 |
ttaccactttcattcatggttgctggaatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttatc |
101 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9618353 |
ttaccactttcattcatggtagctggaatagcagcagctctttcagctctttgttatgctgagttggccagtcgttttccttctgctggaagtgcttatc |
9618254 |
T |
|
| Q |
102 |
attatgcttacatatgtcttggtgaagggtatttatacattcaccttctttacattc |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9618253 |
attatgcttacatatgtcttggtgaagggtatttatacattcaccttctttagattc |
9618197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 9633080 - 9632920
Alignment:
| Q |
1 |
tttaccactttcattcatggttgctggaatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9633080 |
tttaccactttcattcatggttgctggtatagcagctgctatttcagctctttgctatgctgagttggctagtcgttttccttctgctggaagtgcttat |
9632981 |
T |
|
| Q |
101 |
cattatgcttacatatgtcttggtgaagggtatttatacattcaccttctttacattctta |
161 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
9632980 |
cattatgcttacatatgtcttggtgaagggtatttatacattctccttctttagattctta |
9632920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 9657983 - 9657836
Alignment:
| Q |
188 |
gactgcatagcttattagatatcaatttagagatgatattttgtgtataatgt-ttgcagggtttcttggttgattggttggtccttaatattggaatat |
286 |
Q |
| |
|
|||||||||| |||||| || |||| | |||| |||||| || ||| || | | |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
9657983 |
gactgcataggttattaaatgtcaactgagagttgatatattttgtgtactatattgcagggttgcttggttgataggttggtccttaatattggaatat |
9657884 |
T |
|
| Q |
287 |
ggtgttggtggagctgctgtcgctcgtggcattacccctaatttggta |
334 |
Q |
| |
|
||| |||||||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
9657883 |
ggtattggtggagctgctgttgctcgtggcataacccccaatttggta |
9657836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 337
Target Start/End: Complemental strand, 9632695 - 9632595
Alignment:
| Q |
237 |
atgtttgcagggtttcttggttgattggttggtccttaatattggaatatggtgttggtggagctgctgtcgctcgtggcattacccctaatttggtata |
336 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| ||||| || ||||| ||||||| ||| ||||||||||| ||||| ||||||||||| |
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| T |
9632695 |
atgtttgcagggttgcttggttgattggctggtccttaactctggaaactgtggttggcggagctgttgttgctcgtggcataaccccaaatttggtata |
9632596 |
T |
|
| Q |
337 |
g |
337 |
Q |
| |
|
| |
|
|
| T |
9632595 |
g |
9632595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 33641658 - 33641769
Alignment:
| Q |
21 |
ttgctggaatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttatcattatgcttacatatgtct |
120 |
Q |
| |
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||||||| ||||||| | ||||||||| |||||||||| ||||| ||| || | | ||||||||||| ||||| ||||| ||| | ||||||||||| |
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| T |
33641658 |
ttgctgggttagcagctggtctttcagccttttgttatgcagagttagcttgtagatgcccttctgctgggagtgcatatcactattcatacatatgtct |
33641757 |
T |
|
| Q |
121 |
tggtgaagggta |
132 |
Q |
| |
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||| |||||||| |
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|
| T |
33641758 |
tggagaagggta |
33641769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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