View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_high_21 (Length: 367)
Name: NF14267_high_21
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 105 - 367
Target Start/End: Original strand, 39823461 - 39823723
Alignment:
| Q |
105 |
tttattattcatagaatacaaaaagaggcaaaaatgttgaactagttaagcaggtaaccaagcagaagcaaaaacaacattatgacctttccaagtaagc |
204 |
Q |
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| T |
39823461 |
tttattattcatagaatacaaaaagaggcaaaaatgttgaactagttaagcaggtaaccaagcagaagcaaaaacaacattatggcctttccaagtaagc |
39823560 |
T |
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| Q |
205 |
acaatatgctcatcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatccctt |
304 |
Q |
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| T |
39823561 |
acaatatgctcatcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatccctt |
39823660 |
T |
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| Q |
305 |
gaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactcttt |
367 |
Q |
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| T |
39823661 |
gaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactcttt |
39823723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 5617905 - 5617801
Alignment:
| Q |
156 |
aggtaaccaagcagaagcaaaaacaacattatgacctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatca |
255 |
Q |
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| T |
5617905 |
aggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccatccaactgcatgctcatca |
5617806 |
T |
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| Q |
256 |
agcat |
260 |
Q |
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| T |
5617805 |
agcat |
5617801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 21163192 - 21163088
Alignment:
| Q |
156 |
aggtaaccaagcagaagcaaaaacaacattatgacctttccaagtaagcacaatatgctcatcttctttcttcaatccccatccagcagcatgttcatca |
255 |
Q |
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||||||||||||||||||||| | ||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||| | ||||| |||||| |
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| T |
21163192 |
aggtaaccaagcagaagcaaatataacattatgccctttccaagtaagcacaagaaactcgtcttctttcttcaatccccatccaactgcatgctcatca |
21163093 |
T |
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| Q |
256 |
agcat |
260 |
Q |
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||||| |
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| T |
21163092 |
agcat |
21163088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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