View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_high_24 (Length: 354)
Name: NF14267_high_24
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 8233716 - 8233389
Alignment:
| Q |
14 |
agaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8233716 |
agaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcc |
8233617 |
T |
|
| Q |
114 |
tcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8233616 |
tcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctccggagcttgagggtttttgaaacacactttggtattgatgtggtttc |
8233517 |
T |
|
| Q |
214 |
agacccaaatgagcttgctcgtgtttatgaatctttgttcatacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaagaaact |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8233516 |
agacccaaatgagcttgctcgtgtttatgaatctttgttcacacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaagaaact |
8233417 |
T |
|
| Q |
314 |
aagcagatgatgcttgcaatggctgatg |
341 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
8233416 |
aagcagatgatgcttgcaatggcagatg |
8233389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 8237065 - 8236736
Alignment:
| Q |
12 |
agagaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcg |
111 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8237065 |
agagaaaaatgagtgtggaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcg |
8236966 |
T |
|
| Q |
112 |
cctcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8236965 |
cctcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctccggagcttgaggatttttgaaacacactttggtattgatgtggat |
8236866 |
T |
|
| Q |
212 |
tcagacccaaatgagcttgctcgtgtttatgaatctttgttcatacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaagaaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8236865 |
tcagacccaaatgagcttgctcgtgtttatgaatctttgttcatacaattcgatcacaacttgaatggcacaattgatttggaagaattcaagaaggaaa |
8236766 |
T |
|
| Q |
312 |
ctaagcagatgatgcttgcaatggctgatg |
341 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
8236765 |
ctaagcagatgatgcttgcaatggcagatg |
8236736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 8223954 - 8223628
Alignment:
| Q |
15 |
gaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
8223954 |
gaaagatgagtgtagaaattttggatggtgccacaattgtccatttccttgaagatgaagaagcatttaatagctcggtaggaaatcggtttgctcggct |
8223855 |
T |
|
| Q |
115 |
cgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattca |
214 |
Q |
| |
|
||||||||| || || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8223854 |
cgacacaaataaggatggtctgctctcctatgatgagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattca |
8223755 |
T |
|
| Q |
215 |
gacccaaatgagcttgctcgtgtttatgaatctttgttcatacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaagaaacta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
8223754 |
gacccaaatgagcttgctcgtgtttatgagtcgttgttcatacagttcgatcacaacttgaatggcacggttgatctggaagaattcaagaaagaaacta |
8223655 |
T |
|
| Q |
315 |
agcagatgatgcttgcaatggctgatg |
341 |
Q |
| |
|
|||| || |||||||||||||| |||| |
|
|
| T |
8223654 |
agcaaattatgcttgcaatggcagatg |
8223628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 8240031 - 8239872
Alignment:
| Q |
13 |
gagaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |
|
|
| T |
8240031 |
gagaaagatgagtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcgtttaatagctcagtaggaaatcagtttgctcgg |
8239932 |
T |
|
| Q |
113 |
ctcgacacaaacaacgacggtcttctctcctatgaagagatgttgaaggagctcaggagc |
172 |
Q |
| |
|
||||||||||| || || ||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
8239931 |
ctcgacacaaataaggatggtctgctctcttatgatgagatgttgaaggagctcaggagc |
8239872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University