View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_high_28 (Length: 341)
Name: NF14267_high_28
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_28 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 29611897 - 29612235
Alignment:
| Q |
10 |
gagagagatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataa |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29611897 |
gagaaagatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacacctttatattgtgatcccaagttaactaacataataa |
29611996 |
T |
|
| Q |
110 |
acttccatctaatcataattaacttctaactacctacacaaattctaacaaatatctaacacaaagtttttatttgatgtgcatgttttcaggacaactg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29611997 |
acttccatctaatcataattaacttctaactacctaaacaaattctaacaaatatctaacac--agtttttatttgatgtgcatgttttcaggacaactg |
29612094 |
T |
|
| Q |
210 |
cacccctacacacattcgttccctgctttttcaag-aagtcaat--------acttgggattacaatcaacggtgagtacaaattgaggtttttggtttc |
300 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||| | ||| | |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612095 |
cactactacacagattcgttccctgctttttcaagtcaatcattactgaatcacttgggaccacaatcaacggtgagtacaaattgaggtttttggtttc |
29612194 |
T |
|
| Q |
301 |
tgttccttctagcttgtaggtttctagctcattcttaacca |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612195 |
tgttccttctagcttgtaggtttctagctcattcttaacca |
29612235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 38467228 - 38467139
Alignment:
| Q |
43 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaac |
132 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||| |||||||||| |||| |
|
|
| T |
38467228 |
aagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaac |
38467139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 17236561 - 17236659
Alignment:
| Q |
43 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaacta |
141 |
Q |
| |
|
||||||||||||| |||| ||| |||| | ||||||| ||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
17236561 |
aagaatatgatacgattagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttctaacta |
17236659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University