View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_high_36 (Length: 307)
Name: NF14267_high_36
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 12127476 - 12127753
Alignment:
| Q |
14 |
agatgaagatgctatcacaaaacaaaattttgttatcaatcgaaaaattgcagtttgaaggaagcctcggagcatcgaagagatttgactaaaatcctga |
113 |
Q |
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| T |
12127476 |
agatgaagatgctatcacaaaacaaaattttgttatcaatcgaaaaactgcagtttgaaggaagcctcggagcatcgaagagatttgactaaaatcctga |
12127575 |
T |
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| Q |
114 |
aatgggagagaagatgcaacaaaaagaacatttggaatcagaaggaaacaaaaattggaaacacaggaacaaatagaacacgagtgat---aaacaaaaa |
210 |
Q |
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| T |
12127576 |
aatgggagagaagatgcaacaaaaagaacatttggaatgagaaggaaacaaaaattggaaacacgagaacaaatagaacacaagtgataaaaaaaaaaaa |
12127675 |
T |
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| Q |
211 |
ccaatgataaaaactcttccttataccttgtttaagcagcaaagatgagtggatttgagaggatttgcgatgtgtttggtg |
291 |
Q |
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| T |
12127676 |
tcaatgataaaagttcttcc---taccttgtttaagcagcaaagatgagttgatttgagaggatttgcgatgtgtttggtg |
12127753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 12114281 - 12114442
Alignment:
| Q |
15 |
gatgaagatgctatcacaaaacaaaattttgttatcaatcgaaaaattgcagtttgaaggaagcctcggagcatcgaagagatttgactaaaatcctgaa |
114 |
Q |
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| T |
12114281 |
gatgaagatgcgatcacaaaacaaaattgtgtaatcagtcacaaatcggtagtttgaagaaagtcaccgatcatcgaagagatttgacaaaactcctgaa |
12114380 |
T |
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| Q |
115 |
atgggagagaagatgcaacaaaaagaacatttggaatcagaaggaaacaaaaattggaaaca |
176 |
Q |
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| T |
12114381 |
atgggagagaagatgcaacaaaaagaacgttttgaataagaaggaaacaaaaattggaaaca |
12114442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 2372584 - 2372468
Alignment:
| Q |
18 |
gaagatgctatcacaaaacaaaattttgttatcaatcgaaaaattgcagtttgaaggaagcctcggagcatcga----agagatttgactaaaatcctga |
113 |
Q |
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||||||||||||||||||||||||| ||| | || || ||| ||| |||||||||||| |||||||||| || | |||||||| ||||||||| |
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| T |
2372584 |
gaagatgctatcacaaaacaaaattgtgtaaccagtcacaaagctgctgtttgaaggaagtctcggagcattgattgaaaagatttgatagaaatcctga |
2372485 |
T |
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| Q |
114 |
aatgggagagaagatgc |
130 |
Q |
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|||| ||||||| |||| |
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| T |
2372484 |
aatgcgagagaacatgc |
2372468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 38702915 - 38702839
Alignment:
| Q |
53 |
tcgaaaaattgcagtttgaaggaagcctcggagcatcgaagagatttgactaaaatcctgaaatgggagagaagatg |
129 |
Q |
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||||||| |||| |||||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
38702915 |
tcgaaaagttgcgatttgaaggaagcctcgaagcatcaaagagatttgatagaaatcctgaaatggtagagaagatg |
38702839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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