View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_high_4 (Length: 602)
Name: NF14267_high_4
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 34 - 576
Target Start/End: Original strand, 5142174 - 5142739
Alignment:
| Q |
34 |
ctcattccaaagaataaaaaagcctaaatttgcatgcgattttcgacatatatcgttgtgcaatgtaatttataggattatatttaaaactattgcaaat |
133 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5142174 |
ctcattgcaaagaataaaaaagcctaaatttgcatgtgattttcgacctatatcgttgtgcaatgtaatttataggattatatttaaaactattgcaaat |
5142273 |
T |
|
| Q |
134 |
aggttgaaaattatactacctgacattattggaaaatttcaaagtgcttt-gttcctgaaagattaattacagataatgctttaattgcttttgaatctt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
5142274 |
aggttgaaaattatactacctgacattattggaaaatttcaaagtgcttttgtttctgaaagattaattacaggtaatgctttaattgcttttgaatatt |
5142373 |
T |
|
| Q |
233 |
ttcattgaatgaggnnnnnnnnngcttggtaagaagggatatgtggggatcaaattggacatgccgaaagcatatgatcga----aatggga-------- |
320 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
5142374 |
ttcattggatgtggaaaaaaaa-gcttggtaagaagggatatgtggggatcaaattggacatggcgaaagcatatgatcgaattgaatgggattttctca |
5142472 |
T |
|
| Q |
321 |
-----------aaatctatgggattttctcagaaatggcaaaatcttgttcaaaattgtatttcttcggtgtctttttctatgttgctcaatggtagccc |
409 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
5142473 |
ttgttatcctaaaatctatgggtttttctcaaaaatggcaaaatcttgttcaaaattgtatttcttcggtttctttttctatgctgctcaatggtagccc |
5142572 |
T |
|
| Q |
410 |
gtgtcaaaatttctctccaaagcgtggtttacgctaaggggaccccttatcacctatttg-ttaatagttgtgcagaggtgttttcaagccttctcacca |
508 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||| ||| |||||||||| |
|
|
| T |
5142573 |
gtgtcaaaatttctctccaaagagtggtttacgtcaaggggaccccttatcacctatttgtttattatttgtgcagaggtgtttttaag-cttctcacca |
5142671 |
T |
|
| Q |
509 |
gagcccaagatgaaaatgttttacatggattgaaaatagctagaggagcgccaagtattacccatctc |
576 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5142672 |
gagcccaagatgaaaatgttttacatggattgaaaatagctagaggagcaccaagtattacccatctc |
5142739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 11803761 - 11803873
Alignment:
| Q |
71 |
gattttcgacatatatcgttgtgcaatgtaatttataggattatatttaaaactattgcaaataggttgaaaattatactacctgacattattggaaaat |
170 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| || | ||||| | ||||||||||| |||||||||||||| | || |||||||||||||||||| |
|
|
| T |
11803761 |
gattttcgacctatatctctttgcaatgtaatatacaaaattatttcaaaaactattgcgaataggttgaaaatcgtcctctctgacattattggaaaat |
11803860 |
T |
|
| Q |
171 |
ttcaaagtgcttt |
183 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11803861 |
ttcaaagtgcttt |
11803873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 20778315 - 20778379
Alignment:
| Q |
119 |
aaaactattgcaaataggttgaaaattatactacctgacattattggaaaatttcaaagtgcttt |
183 |
Q |
| |
|
|||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||| |
|
|
| T |
20778315 |
aaaactattgcaaataggttgaaaatcatcctctccaacattattggaaaatttcaaagtgcttt |
20778379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 14071737 - 14071617
Alignment:
| Q |
119 |
aaaactattgcaaataggttgaaaattatactacctgacattattggaaaatttcaaagtgc-tttgttcctgaaagattaattacagataatgctttaa |
217 |
Q |
| |
|
||||| ||| |||||||||||||| | || || || || || ||||||||||| |||||||| |||||||| | | | |||||||| ||||||| ||| |
|
|
| T |
14071737 |
aaaacaatttcaaataggttgaaattgattcttccggatatcattggaaaattccaaagtgcttttgttccgggacgtttaattactcataatgccttac |
14071638 |
T |
|
| Q |
218 |
ttgcttttgaatcttttcatt |
238 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
14071637 |
tagcttttgaatcttttcatt |
14071617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 14381765 - 14381645
Alignment:
| Q |
119 |
aaaactattgcaaataggttgaaaattatactacctgacattattggaaaatttcaaagtgc-tttgttcctgaaagattaattacagataatgctttaa |
217 |
Q |
| |
|
||||| ||| |||||||||||||| | || || || || || ||||||||||| |||||||| |||||||| | | | |||||||| ||||||| ||| |
|
|
| T |
14381765 |
aaaacaatttcaaataggttgaaattgattcttccggatatcattggaaaattccaaagtgcttttgttccgggacgtttaattactcataatgccttac |
14381666 |
T |
|
| Q |
218 |
ttgcttttgaatcttttcatt |
238 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
14381665 |
tagcttttgaatcttttcatt |
14381645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 32162546 - 32162390
Alignment:
| Q |
89 |
ttgtgcaatgtaatttataggattatatttaaaactattgcaaataggttgaaaattatactacctgacattattggaaaatttcaaagtgc-tttgttc |
187 |
Q |
| |
|
||||| ||||| ||||||| ||| || | ||||| ||||||||||| ||||||||||| || |||||||| |||| || | ||||||||| ||||| | |
|
|
| T |
32162546 |
ttgtgtaatgtgatttataagataatttcaaaaaccattgcaaatagattgaaaattattctccctgacatcattgagaagtatcaaagtgcttttgtgc |
32162447 |
T |
|
| Q |
188 |
ctgaaagattaattacagataatgctttaattgcttttgaatcttttcattgaatga |
244 |
Q |
| |
|
|| ||| |||||||||||||||| || | ||||| ||||| |||||||| |||| |
|
|
| T |
32162446 |
atggaaggctaattacagataatgcgttgttagctttcgaatcatttcattggatga |
32162390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 28708550 - 28708485
Alignment:
| Q |
149 |
ctacctgacattattggaaaatttcaaagtgc-tttgttcctgaaagattaattacagataatgct |
213 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||| || ||||| ||||| ||||||||| |
|
|
| T |
28708550 |
ctaccagacattattggaaaattgcaaagtgcgtttgttcatggtagattgattactgataatgct |
28708485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University