View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_high_5 (Length: 586)
Name: NF14267_high_5
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_5 |
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| [»] scaffold0640 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 43503025 - 43503597
Alignment:
| Q |
1 |
aatgtcatgaattgggtgcaagaattgggactacaaagtgtgaagttctaagtgacttacaagtcctcgtagatgctgtttgtgatagcagtgatggtgc |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503025 |
aatgtcatgaactgggtgcaagaattgggactacaaagtgtgaagttctaagtgacttacaagtcctcgtagatgctgtttgtgatagcagtgatggtgc |
43503124 |
T |
|
| Q |
101 |
atcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttattcaaagacaagcagatatagtagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503125 |
atcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttattcaaagacaagcagatatagtagtt |
43503224 |
T |
|
| Q |
201 |
cataatctaactagagccattttctatgctagtcaccaagtctttgattttgttcctccttgtattttatctcttttaattaataaaatgagttaacttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
43503225 |
cataatctaactagagccattttctatgctagtcaccaagtctttgattttgttcctccttgtcttttatctcttttaattaataaaatgggttaacttt |
43503324 |
T |
|
| Q |
301 |
gtttnnnnnnnnntaacattaccatcggctaaaggacatgattagcctgcaatttctcttcaatggtcttgaagggtttgtttgatagaatacatgagtt |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503325 |
gttt-aaaaaaaataacattaccatcggctaaaggacatgattagcctgcaatttctcttcaatggtcttgaagggtttgtttgatagaatacatgagtt |
43503423 |
T |
|
| Q |
401 |
tcaaaatgatatactaccagaagtagtaaacta-gtgctcgggtgaaatggctcaaaaaggaaagtaagcatgagctaaacatcaaatgcatttcttcta |
499 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43503424 |
tcaaaatgatatactaccagaagtagtaaactaggtactcgggtgaaatggctcaaaaaggaaagtgagcatgagctaaacatcaaatgcatttcttcta |
43503523 |
T |
|
| Q |
500 |
caatgtaggctaaatcaaacacatttcatgttcattccaccctgaatttgtgaaatattccagatgtgtaatgt |
573 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503524 |
caatgtaggctaaatcaaacacatttcatgttcattccaccctgaatttgtgaaatattccagatgtgtaatgt |
43503597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 3428131 - 3428005
Alignment:
| Q |
46 |
ttctaagtgacttacaagtcctcgtagatgctgtttgtgatagcagtgatggtgcatcagagttcaatgtcattgttatcaatattagacatattttagt |
145 |
Q |
| |
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|||||| ||||| |||||| || |||||| |||||||| ||||| ||| ||||| | |||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
3428131 |
ttctaaatgactcacaagtattcatagatg-tgtttgtgctagcaatgaaggtgcgtaagagttcagtgtcattgttaacaatattagatgtattttagt |
3428033 |
T |
|
| Q |
146 |
ctcgaattgtaactttgaggttaagttt |
173 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
3428032 |
ttcgaattgtaactttgaggttaagttt |
3428005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 3350841 - 3350764
Alignment:
| Q |
219 |
attttctatgctagtcaccaagtctttgattttgttcctccttgtattttatctcttttaattaataaaatgagttaa |
296 |
Q |
| |
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|||||||||||||||| |||||||||||||||| || ||||| ||||| ||||||||| |||| | ||||||||||| |
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| T |
3350841 |
attttctatgctagtcgtcaagtctttgattttgctcttccttatatttcatctcttttgattattgaaatgagttaa |
3350764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 176
Target Start/End: Complemental strand, 3350992 - 3350884
Alignment:
| Q |
70 |
tagatgctgtttgtgatagcagtgatggtgcatcagagttcaatgtcattgttatcaatat--tagacatattttagtctcgaattgtaactttgaggtt |
167 |
Q |
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|||||| |||||||| ||| | ||| ||||||| ||| ||||||||| |||||| |||||| ||| ||||||||| | | |||||||||||| |||||| |
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| T |
3350992 |
tagatgttgtttgtgctagtaatgagggtgcataagacttcaatgtcgttgttaacaatatattaggcatattttactattgaattgtaacttagaggtt |
3350893 |
T |
|
| Q |
168 |
aagtttatt |
176 |
Q |
| |
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||||||||| |
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| T |
3350892 |
aagtttatt |
3350884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 267
Target Start/End: Original strand, 41193942 - 41194117
Alignment:
| Q |
96 |
ggtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaacttt-gaggttaagtttattcaaagacaagcagatata |
194 |
Q |
| |
|
|||||||| ||||| ||||| |||||| || ||||| |||||||||||| ||||| |||||| ||||||||||| |||| || ||||| ||||| |
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| T |
41193942 |
ggtgcatcggagtttaatgtgattgtttacagcattaggtgtattttagtctcaaattgcaacttttgaggttaagttaattctgaggcaagcggatatg |
41194041 |
T |
|
| Q |
195 |
gtagttcataatctaactaga---gccattttctatgctagtcaccaagtctttgattttgttcctccttgtattt |
267 |
Q |
| |
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|||| ||||| |||| ||||| ||||||| ||||||||| |||||| | ||||| || | |||||||||||| |
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| T |
41194042 |
gtagctcatactctagctagagcggccatttatgatgctagtcgccaagtttatgattatgctgctccttgtattt |
41194117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 1042874 - 1042952
Alignment:
| Q |
97 |
gtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttat |
175 |
Q |
| |
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||||||| ||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||||| |
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| T |
1042874 |
gtgcatcggagtttaatgtgattgtttacaacattaggtgtattttagtctcaaattgcaactttgaggtgaagtttat |
1042952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 8563 - 8485
Alignment:
| Q |
97 |
gtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttat |
175 |
Q |
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||||||| ||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||||| |
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| T |
8563 |
gtgcatcggagtttaatgtgattgtttacaacattaggtgtattttagtctcaaattgcaactttgaggtgaagtttat |
8485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 33324465 - 33324543
Alignment:
| Q |
97 |
gtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttat |
175 |
Q |
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||||||| ||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||||| |
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| T |
33324465 |
gtgcatcggagtttaatgtgattgtttacaacattaggtgtattttagtctcaaattgcaactttgaggtgaagtttat |
33324543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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