View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_high_57 (Length: 245)
Name: NF14267_high_57
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 31997680 - 31997922
Alignment:
| Q |
3 |
caacattcttgtgtcaatgttgtgtccgtttcagtgctttatacatccactatgagctctttgcgtatttacttctccacctctattgttatgttat--- |
99 |
Q |
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| T |
31997680 |
caacattcttgtgtcaatgttgtgtccgtttcagtgctttatacatccactatgagctctttgcgtatttacttctccacctctattgttatgttatttg |
31997779 |
T |
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| Q |
100 |
agtgttctcttatttttcaatttactttagtagctgtactccatgagtttttaaggatgcaggctctgtcattttatttgattatacactgatgcgatcc |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31997780 |
agtgttctcttatttttcaatttactttggtagctgtactccatgagtttttaaggatgcaggctctgtcattttatttgattatacactgatgcgatcc |
31997879 |
T |
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| Q |
200 |
caaggacgccgaatactcgagttccaagaaaatgcctcgtgga |
242 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31997880 |
caaggacgtcgaatactcgagttccaagaaaatgcctcgtgga |
31997922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 31996604 - 31996635
Alignment:
| Q |
214 |
actcgagttccaagaaaatgcctcgtggatgt |
245 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31996604 |
actcgagttccaagaaaatgcctcgtggatgt |
31996635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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