View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_high_62 (Length: 235)
Name: NF14267_high_62
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 31852980 - 31852778
Alignment:
| Q |
16 |
atatcaaagcatggtaccagtggttactagaagcaattgttggagcagtacatgcaataaattcaagagcctac--ctgt-gagaaatgcaacctgcgta |
112 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
31852980 |
atatcaaagcatggtac---tggttactacaagcaattgttggagcagtacaagcaataaattcaagagcctactactattgagaaatgcaacctgcgta |
31852884 |
T |
|
| Q |
113 |
tgtgttgggggagaattgattttcattcaagcatcgatttgcaaactatattcattcaatacattaagcaattacatcgaattgcgatttggaggagaat |
212 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
31852883 |
tgttttgggggagaattgatttacattcaagcatcgatttgcaacctatattcattcaatacattaagcaattacatcaatttgcaatttggaggagaat |
31852784 |
T |
|
| Q |
213 |
tggttt |
218 |
Q |
| |
|
|||||| |
|
|
| T |
31852783 |
tggttt |
31852778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 36325948 - 36325750
Alignment:
| Q |
16 |
atatcaaagcatggtaccagtggttactagaagcaattgttggagcagtacatgcaataaattcaagagcctac--ctgt-gagaaatgcaacctgcgta |
112 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
36325948 |
atatcaaagcatggtac---tggttactacaagcaattgttggagcagtacaagcaataaattcaagagcctactactattgagaaatgcaacctgcgta |
36325852 |
T |
|
| Q |
113 |
tgtgttgggggagaattgattttcattcaagcatcgatttgcaaactatattcattcaatacattaagcaattacatcgaattgcgatttggaggagaat |
212 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
36325851 |
tgttttgggggagaattgatttacattcaagcatcaatttgcaacctatattcattcaatacattaagcaattacatcgatttgcaatttgggggagaat |
36325752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 31762658 - 31762857
Alignment:
| Q |
16 |
atatcaaagcatggtaccagtggttactagaagcaattgttggagcagtacatgcaataaattcaagagcctac--ctgt-gagaaatgcaacctgcgta |
112 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
31762658 |
atatcaaagcatggtac---tggttactacaagcaattgttggagcagtacaagcaataaattcaagagcctactactattgagaaatgcaacctgcgta |
31762754 |
T |
|
| Q |
113 |
tgtgttgggggagaattgattttcattcaagcatcgatttgcaaactatattcattcaatacattaagcaattacatcgaattgcgatttggaggagaat |
212 |
Q |
| |
|
||| ||||| |||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
31762755 |
tgttctggggtagaattaatttacattcaagcatctatttgcaacctatattcattcaatacattaagcaattacatcgatttgcaatttggaggagaat |
31762854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 42825351 - 42825404
Alignment:
| Q |
34 |
agtggttactagaagcaattgttggagcagtacatgcaataaattcaagagcct |
87 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
42825351 |
agtggttactacaagcaattgttggagcagaacaagcaatacattcaagagcct |
42825404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University