View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_high_66 (Length: 226)
Name: NF14267_high_66
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_66 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1006691 - 1006467
Alignment:
| Q |
1 |
acgttcagccaatgaagtattataatactctaagacggcttggtccgttgctgccattcttaccatcctttgcaagtaactctcaaagtgcatggctcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1006691 |
acgttcagccaatgaagtattataatactctaagacggcttggtccgttgctgccattcttaccatcctttgcaagtaactctcaaagtgcatggctcca |
1006592 |
T |
|
| Q |
101 |
tttcctgcataattcgggacaaccacgttaataagtctagctaaagaataataattaaaccctaacagctttcgtgaccctcctaaaccccacctttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
1006591 |
tttcctgcataattcgggacaaccacgttaataagtctagctaaagaataataattaaaccctaacagctttcgcgaccct-ctaaaccccacctttgac |
1006493 |
T |
|
| Q |
201 |
caaacactccactttaccctcttcca |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1006492 |
caaacactccactttaccctcttcca |
1006467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University