View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_high_7 (Length: 536)
Name: NF14267_high_7
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Original strand, 27632531 - 27633029
Alignment:
| Q |
19 |
tatacgaaaatagtcctcgaaattgaaaacctttgattatattagttcttttagatcggtcaatttagtccttgaaa-ttgtctcgcagggactaagttg |
117 |
Q |
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| T |
27632531 |
tatacgaaaatagtcctcgaaattgaaaacctttgattatattagttcttttagatcggtcaatttagtccttgaaaattgtctcgcaagg--taagttg |
27632628 |
T |
|
| Q |
118 |
acatcatgcaacaatactctttattttcctaccatgttgaaagaaatactactgtttaaacatactcttatataaattatgctacataattttgtggcag |
217 |
Q |
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| T |
27632629 |
acatcgtgcaacaatactctttattttcctaccatgttgaaagaaatactactgtttaaacatactcttatataaattatgctacataattttgtggcag |
27632728 |
T |
|
| Q |
218 |
gttaatctggcttgtcaagctggcttgatagattccattatagacgatagaatgggcgaatatccatccgaatgcttagacaagttcttagctctagccc |
317 |
Q |
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| T |
27632729 |
gttaatctggcttgtcaagctggcttgatagattccattatagacgatagaatgggcgaatatccatccgaatgcttagacaagttcttagctctagccc |
27632828 |
T |
|
| Q |
318 |
tcagttgctgtcatgaccatccagaggagagaccatcaatgttagatgtggtgagggaattggaagacattattgccttgttacctgaaactgaaattag |
417 |
Q |
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| T |
27632829 |
tcagttgctgtcatgaccatccagaggagagaccatcaatgttagatgtggtgagggaattggaagacattattgccttgttacctgaaactgaaattag |
27632928 |
T |
|
| Q |
418 |
tttatcatcagacatttctttagataattctggtaaaatggcaccctcatcttcatcatcaacacaaacatcaggatttattacgacaagaaaggaccaa |
517 |
Q |
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| T |
27632929 |
tttatcatcagacatttctttagataattctggtaaaatggcaccctcatcttcatcatcaacacaaacatcaggattcattacgacaagaaaggaccaa |
27633028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 108 - 478
Target Start/End: Original strand, 6862164 - 6862531
Alignment:
| Q |
108 |
gactaagttgacatcatgcaacaatactctttattttcctaccatgttgaaagaaatactactgtttaaacatactcttatataaattatgctacataat |
207 |
Q |
| |
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|||||||| | ||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| || | ||| |
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| T |
6862164 |
gactaagtcggcatcatgcaacaacactcttcattttcctaccaagttgaaagaaatactactgattaaacatactcttattgctattatggtatacaat |
6862263 |
T |
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| Q |
208 |
tttgtggcaggttaatctggcttgtcaagctggcttgatagattccattatagacgatagaatgggcgaatatccatccgaatgcttagacaagttctta |
307 |
Q |
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| T |
6862264 |
tttatatcaggttaatttggcttgtcgatctggcataatggattccattatagataacagaatgggtgagtatccatctgaatgcacagacaagttctta |
6862363 |
T |
|
| Q |
308 |
gctctagccctcagttgctgtcatgaccatccagaggagagaccatcaatgttagatgtggtgagggaattggaagacattattgccttgttacctgaaa |
407 |
Q |
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| T |
6862364 |
gctctggccctcagttgctgtcatgaccatccagaggagagaccatcaatgttagatgtggtgagggagttggaagacattattgccttggtacctgaaa |
6862463 |
T |
|
| Q |
408 |
ctgaaattagtttatcatcagacatttctttagataattctggtaaaatggcaccctcatcttcatcatca |
478 |
Q |
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| T |
6862464 |
ctgaaattagtttatcg---gatgtttctttcgataattctggtaaaatggcaccctcatcttcatcatca |
6862531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 26412044 - 26412088
Alignment:
| Q |
51 |
ttgattatattagttcttttagatcggtcaatttagtccttgaaa |
95 |
Q |
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| T |
26412044 |
ttgattacattagttcttttaggtcagtcaatttagtccatgaaa |
26412088 |
T |
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