View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_1 (Length: 838)
Name: NF14267_low_1
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 13 - 822
Target Start/End: Original strand, 32671111 - 32671920
Alignment:
| Q |
13 |
attatactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttcacttttccaatctccatccttaaatgtcctctttcccatttattgc |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32671111 |
attacactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttcacttttccaatctccatccttaaatgtcctctttcccatgtattgc |
32671210 |
T |
|
| Q |
113 |
tttgtataccctctctctattgtttgggaatcgaggctgaggatatattttaaataaataaacctcactcctcaatctgctgagacacctattacaaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
32671211 |
tttgtataccctctctctattgtttgggaatcgaggctgaggatatattttaaataaataaacctcgctcctcaacctgttgagacacctattacaaaag |
32671310 |
T |
|
| Q |
213 |
ataaaactgtaagggcatacataagatccaaagcgaacaatacctcataacgtggtgttgtagacttgagagccgacaaatccttagtcccttagcctta |
312 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32671311 |
ataaaactgtgagggcatacataagatccaaagcgaacaatatctcataacgtggtgttgcagacttgagagccgacaaatccttagtcccttagcctta |
32671410 |
T |
|
| Q |
313 |
actggaggttacggttttgcttagattgtttaataaacgtcgctcacactcccctatccaatgaggtgccttttagaaaggataaaccgtgagagcttta |
412 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671411 |
actggaggctacggttttgcttagactgtttaataaacgtcgctcacactcccctatccaatgaggtgccttttagaaaggataaaccgtgagagcttta |
32671510 |
T |
|
| Q |
413 |
catacaagacttaaagtcgacaattaatatcacgaaaatgtggtgtcgtgcactcgaagacgaagttggtgaaggtcaaaatagtgtagtagttaaatat |
512 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671511 |
catacaagacctaaagccgacaattaatatcacgaaaatgtggtgtcgtgcactcgaagacgaagttggtgaaggtcaaaatagtgtagtagttaaatat |
32671610 |
T |
|
| Q |
513 |
caaagattatttgattcttgtatgatgattgttctgttccattgttcttcaattgggtcacttactttgttttgtttggcattagtcgcatttgaagtag |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671611 |
caaagattatttgattcttgtatgatgattgttctgtttcattgttcttcaattgggtcacttactttgttttgtttggcattagtcgcatttgaagtag |
32671710 |
T |
|
| Q |
613 |
cagtcaagaaactttgtaactatgactttatgatgcaatcaaaattcttttttatgtgtttcatgctgatataacgtgctatcacattatgtatgcatga |
712 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671711 |
cagtaaagaaactttgtaactatgactttatgatgcaatcaacattcttttttaagtgtttcatgctgatataacgtgctatcacattatgtatgcatga |
32671810 |
T |
|
| Q |
713 |
tcttattctttacaaactaagaatttaagaagggtagccaaactttgacactttttggctaactttggaacatgatcatgtgtccaaagtccaaagacat |
812 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32671811 |
tcttattctttacaaactaggaatttaagaagggtagccaaactttgacactttttggctaactttggaacatgatcatgtgtccaaagtccaaagacat |
32671910 |
T |
|
| Q |
813 |
gacttatatc |
822 |
Q |
| |
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|||||||||| |
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|
| T |
32671911 |
gacttatatc |
32671920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 45505437 - 45505392
Alignment:
| Q |
21 |
ggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttc |
66 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
45505437 |
ggtcgagatgaattagtgaaaaacatttcgctatacatagcatttc |
45505392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 44533198 - 44533145
Alignment:
| Q |
13 |
attatactggtcgagatgaattcgtgaaaaacatttcgctacacatagcatttc |
66 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
44533198 |
attacactggtcgggatgaattcgtgaaaaacattttgctatacatagcatttc |
44533145 |
T |
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