View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_low_11 (Length: 526)
Name: NF14267_low_11
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_11 |
 | |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Complemental strand, 35139277 - 35138782
Alignment:
| Q |
17 |
cagagatattagggggcttaaagagaaacgttcatatctgtctccgtgtgctagcnnnnnnnnnnnnnaacattctccattacttagagaactttttgct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35139277 |
cagagatattagggggcttaaagagaaacgttcatatctgtctccgtgtgctagctttttgattttttaacattctccattacttagagaactttttgct |
35139178 |
T |
|
| Q |
117 |
ggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgttctttattgataaaaaatattta |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
35139177 |
ggtttatttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgttctttattgatacaaaatattta |
35139078 |
T |
|
| Q |
217 |
tattgatacaaaactctttgt-----gttaggttttttcacaactcataatgtcgttggcaaaccactcagtaccaagattggtgaatcaaggggattgc |
311 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35139077 |
tattgatacaaaacactttgttgtgtgttaggttttttcacaactcataatgtcattggcaaaccactcagtaccaagattggtgaatcaaggggattgc |
35138978 |
T |
|
| Q |
312 |
aaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttcaccacaagatttgtttagggtagcacaagtgtgtacccatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35138977 |
aaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttcaccacaagatttgtttagggtagcacaagtgtgtacccatt |
35138878 |
T |
|
| Q |
412 |
tgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagt |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35138877 |
tgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagt |
35138782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 35131969 - 35131474
Alignment:
| Q |
18 |
agagatattagggggcttaaagagaaacgttcatatctgtctccgtgtgctagcnnnnnnnnnnnnn-aacattctccattacttagagaactttttgct |
116 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
35131969 |
agagatattatgggacttaaagagaaacgttcatatatgtctttgtgtgctagcctatggatttttttaacattctccattacttagagaactttttgct |
35131870 |
T |
|
| Q |
117 |
ggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgttctttattgataaaaaatattta |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
35131869 |
ggtttctttttcccatgtaagttttgggatattatgtaatgtaaattttgattttatttcaaactattgatttttgttctttattgataaaaattattta |
35131770 |
T |
|
| Q |
217 |
tattgatacaaaactctttgt-----gttaggttttttcacaactcataatgtcgttggcaaaccactcagtaccaagattggtgaatcaaggggattgc |
311 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35131769 |
tattgatacaaaacactttgttgtgtgttaggttttttcacaaatcatgatgtcattggaaaaccactcagtaccaagattgaagaatcaaggggattgc |
35131670 |
T |
|
| Q |
312 |
aaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttcaccacaagatttgtttagggtagcacaagtgtgtacccatt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35131669 |
aaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtgtctttcaccacaagatttgtttagggtagcacaagtgtgtacccatt |
35131570 |
T |
|
| Q |
412 |
tgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35131569 |
tgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagt |
35131474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 85 - 507
Target Start/End: Complemental strand, 14278947 - 14278523
Alignment:
| Q |
85 |
aacattctccattacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttg-cttttatttcaaactat |
183 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||| || ||||| |||||||| |||||||||||||||||||||| |||| ||||||| ||| |
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|
| T |
14278947 |
aacattttccattacttatagacctttttgctggttgtttcttccctcgtaagtttttcaatcttatgtaatgtaaattttgactttcttttcaaa-tat |
14278849 |
T |
|
| Q |
184 |
tgattgctgttctttattgataaaaaa-tatttatattgatacaaaactct-ttgtgttaggttttttcacaactcataatgtcgttggcaaaccactca |
281 |
Q |
| |
|
| | | |||| ||| || |||||||| ||||||||||||||||| || | |||| | ||||||| ||||| |||||||||| | |||||||||||| |
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|
| T |
14278848 |
taactattgttgtttgttaataaaaaattatttatattgatacaactctttgttgtttaaggttttcccacaaatcataatgtcatcagcaaaccactca |
14278749 |
T |
|
| Q |
282 |
gtaccaagattggtgaatcaaggggattgcaaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttcaccacaagatt |
381 |
Q |
| |
|
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||| ||||||||||||||||| |
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|
| T |
14278748 |
gcaccaaaattgaagaatcaaggggattgcaaggtttctcttttagatttacctgatgaaattgtacattgcatacttaagcgtctttcaccacaagatt |
14278649 |
T |
|
| Q |
382 |
tgtttagggtagcacaagtgtgtacccatttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctagg |
481 |
Q |
| |
|
||| |||| || | |||||||||| | ||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
14278648 |
tgtataggatatcgcaagtgtgtagtcgtttgaggaatattagtagaggcgattgtttgtgggagaaacatgtcgaacaaaaatggagcaggttggtagg |
14278549 |
T |
|
| Q |
482 |
taatgatgcttaccatgaatgggagt |
507 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
14278548 |
tgatgatgcttaccatgaatgggagt |
14278523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 95 - 507
Target Start/End: Complemental strand, 14284406 - 14284001
Alignment:
| Q |
95 |
attacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgtt |
194 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||| ||||| || ||||||| ||||||||||||||||| |||| ||| || |||||||| | || |||| |
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|
| T |
14284406 |
attacttatagaactttttgttggttgcttcttcccttacaagttttca-atcttatgtaatgtaaaatttgactttctt--aaactattaactgttgtt |
14284310 |
T |
|
| Q |
195 |
ctttattgataaaaaatatttatattgatacaaaactctttgtg---ttaggttttttcacaactcataatgtcgttggcaaaccactcagtaccaagat |
291 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||| |||||||||| ||| || |
|
|
| T |
14284309 |
gtttattatttgaaagtatttatattgatacaaaactctttgttgtcttatgtttttccacaaatcataatgtccc-------ccactcagtagcaaaat |
14284217 |
T |
|
| Q |
292 |
tggtgaatcaaggggattgcaaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttcaccacaagatttgtttagggt |
391 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| | ||| ||||||| ||||||||||||||||| | |
|
|
| T |
14284216 |
tggagaatcaaggggattgcaaggtttctcttttagatttatctgatgaagttgtacattgcatcattaagcatctttcatcacaagatttgtttaggat |
14284117 |
T |
|
| Q |
392 |
agcacaagtgtgtacccatttgaggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgct |
491 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||| ||| |||| |||||||||||||| |||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
14284116 |
agcacaagtgtgtactaatttgaggaacatgagtagaagcgattatttatgggagaaacatgtcgaacaaaagtggagcatgttggtaggtaatgatgct |
14284017 |
T |
|
| Q |
492 |
taccatgaatgggagt |
507 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
14284016 |
taccatgaatgggagt |
14284001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 437 - 507
Target Start/End: Complemental strand, 14258753 - 14258683
Alignment:
| Q |
437 |
tttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgggagt |
507 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
14258753 |
tttgtgagagaaacatgtcgaacaaaaatggagcaggttggtaggtaataatgcttaccatgaatgggagt |
14258683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 314 - 503
Target Start/End: Original strand, 2774 - 2963
Alignment:
| Q |
314 |
ggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttcaccacaagatttgtttagggtagcacaagtgtgtacccatttg |
413 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||| ||| || || ||||||||||||||||||| ||||| || | |||||||||| | |||| |
|
|
| T |
2774 |
ggtttctcttttagatttacctggtgaaattgtagattacatacttaaacgtctttcaccacaagatttgattaggttatcgcaagtgtgtagtcgtttg |
2873 |
T |
|
| Q |
414 |
aggaatattagtagaagggatcatttgtgggagaaacatgtggaacaaaaatggagcaggttgctaggtaatgatgcttaccatgaatgg |
503 |
Q |
| |
|
||||||||||||||| | ||| | |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
2874 |
aggaatattagtagaggcgattgtatgtgggagaaacatgtcgaacaaaaatggagcaggttggtaggtgatgatgcttaccatgaatgg |
2963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 277
Target Start/End: Original strand, 2575 - 2760
Alignment:
| Q |
92 |
tccattacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgct |
191 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||| ||| ||| ||||||||| || | |
|
|
| T |
2575 |
tccattacttatagaactttttgttggttgtttcttccctcttaagtttttcgatcttatgtaatgtaaattttaactttgttttcaactattgactgtt |
2674 |
T |
|
| Q |
192 |
gttctttattgat---aaaaaatatttatattgatacaaaactctttgtgttaggttttttcacaactcataatgtcgttggcaaacca |
277 |
Q |
| |
|
||| ||| ||||| |||||||||||||||||||||||||||||| | |||||||| |||| |||||||||| | ||||||||| |
|
|
| T |
2675 |
gttgtttgttgataaaaaaaaatatttatattgatacaaaactcttcg---taggttttcccacagatcataatgtcatcggcaaacca |
2760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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