View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_low_13 (Length: 481)
Name: NF14267_low_13
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 80 - 358
Target Start/End: Complemental strand, 27634540 - 27634273
Alignment:
| Q |
80 |
gttagaaacttttgggttccgcaagaatgattatgaagtatagaaaattaccaactttattttttctctnnnnnnncaaaatattaacttttcatatcct |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||| | |||| |||||||||||||||||| |
|
|
| T |
27634540 |
gttagaaacttttgggttccgcaagaatgattatgaagcataggaaattacaaactttactttttctataaaaa---aaaacattaacttttcatatcct |
27634444 |
T |
|
| Q |
180 |
ttaatctttcacattcctacctaactatctaccaaaaaggcaaaaattaagcatcctcttctctttctacgggtggcaaaaagtaagtttcctcttctct |
279 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
27634443 |
ttaatctttcacattcctacccaactatctaccaaaaac--------taagcatcatcttctctttctacgggtggcaaaaaccaagtttcctcttatct |
27634352 |
T |
|
| Q |
280 |
caaaaactaagctctctacgagtggataactgtagaattgagaagtagcaataggctccatcaaaaaagaaaattgttg |
358 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27634351 |
caaaaactaagctttctatgagtggataaccgtagaactgagaagtagcaataggctccatcaaagaagaaaattgttg |
27634273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 45175859 - 45175755
Alignment:
| Q |
356 |
ttgattctaaattttgatcaattttttgtgcatgtttacttttcttagtttgtctctcttattgtggtattcctatattgattgttgactgtcgagtgat |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
45175859 |
ttgattctaaattttgatcaattttttgtgcatgtttacttttcttagtttgtctctcttattgtggtgttcctatattgat-------tgtcgagtgat |
45175767 |
T |
|
| Q |
456 |
ttagagtataat |
467 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45175766 |
ttagagtataat |
45175755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 45176090 - 45175965
Alignment:
| Q |
80 |
gttagaaacttttgggttccgcaagaatgattatgaagtatagaaaattaccaactttattttttctctnnnnnnncaaaatattaacttttcatatcct |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
45176090 |
gttagaaacttttgggttccgcaagaatgattatgaagcatagcaaattacaaactttactttttctct-aaaaaacaaaactttaacttttcatatcct |
45175992 |
T |
|
| Q |
180 |
ttaatctttcacattcctacctaacta |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45175991 |
ttaatctttcacattcctacctaacta |
45175965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 45175945 - 45175883
Alignment:
| Q |
294 |
tctacgagtggataactgtagaattgagaagtagcaataggctccatcaaaaaagaaaattgt |
356 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| || || |||||||||| |||||||||| |
|
|
| T |
45175945 |
tctacgggtggataaatgtagaattgagaagtagcgatgggttccatcaaaagagaaaattgt |
45175883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 419
Target Start/End: Original strand, 48731607 - 48731635
Alignment:
| Q |
391 |
ttacttttcttagtttgtctctcttattg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48731607 |
ttacttttcttagtttgtctctcttattg |
48731635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 419
Target Start/End: Original strand, 46293681 - 46293709
Alignment:
| Q |
391 |
ttacttttcttagtttgtctctcttattg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46293681 |
ttacttttcttagtttgtctctcttattg |
46293709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University