View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_16 (Length: 426)
Name: NF14267_low_16
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 16805730 - 16806140
Alignment:
| Q |
16 |
taattcactgcactttagatgatattctacgtggtagtttcatgaagttcacattgcaatctatctttacggtcaaataaagataacaaataatctagca |
115 |
Q |
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| T |
16805730 |
taattcactgcactttagatgatattctacgtggtagtttcatgaagttcacattgcaatctatctctacggtcaaataaagataagaaataatctagca |
16805829 |
T |
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| Q |
116 |
taaacacaatcaaaagtataaggtgtttaatatcacacgtgtgttctacannnnnnnattaaggaatgtgtgttctaattgtgtatnnnnnnnnnnnnnn |
215 |
Q |
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| T |
16805830 |
caaacacaatcaaaagtataaggtgtttaatatcacacgtgtgttctagatttttttattaaggaatgtgtgttctaattgtgtataaaaacaaaaaatg |
16805929 |
T |
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| Q |
216 |
nnnnnttacaagacaaacaaataaaccagtagcatatgttctttgtttaattactttcatgacccacttcaaatatgacatgattaaaataccaatcaca |
315 |
Q |
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| T |
16805930 |
aaaaattacaagacaaacaaataaaccagtagcatatgttctttgtttaattactttcatgacccacttcaaatatgacatgattaaaataccaatcaca |
16806029 |
T |
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| Q |
316 |
ttttcgtcaatatcatcactaacaagtgtcaatattgagggtcgctttattcgaatggaatacataagaatctcactgaattttcaaaagtgttctcgat |
415 |
Q |
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| T |
16806030 |
ttttcgtcaatatcatcactaacaagtgtcaatattgagggtcactttattcgaatggaatacataagaatctcactgaattttcaaaagtgttctcgat |
16806129 |
T |
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| Q |
416 |
caagtgcagaa |
426 |
Q |
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| T |
16806130 |
caagtgcagaa |
16806140 |
T |
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