View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_17 (Length: 412)
Name: NF14267_low_17
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 13499895 - 13500275
Alignment:
| Q |
19 |
aaagcatcgcgccaaacactaccaaccaccgctacacttgcaccactatagtgcgctattgacaacatagcacccctcaaactaacaaggacaacctttc |
118 |
Q |
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| T |
13499895 |
aaagcatcgcgccaaacactaccaaccaccgctacacttgcaccactatagtgcgctattgacaacatagcacccctcaaactaacaaggccaacctttc |
13499994 |
T |
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| Q |
119 |
aaaagacaaaaccacaagggatgactcacacaaggcctaaagtgaacaatacattggaaatgcagtggacttgagcttggaacatataaattcttacatt |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |
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| T |
13499995 |
aaaagacaaaaccacgagggatgactcacacaaggcctaaagtgaacaatacattggaaatgcggcggacttgagcttggaacatattaattcttacatt |
13500094 |
T |
|
| Q |
219 |
tcaaataaaatcacataattatgttaccttcaagagaaaaaagtttattcagcaatcgtattatttcttttccatgctttaacatcatccaagtaagtaa |
318 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13500095 |
tcaaataaaatcacataagtatgtttccttcaagagaaaaaagtttattcagcaatcatattatttcttttccatgctttaacatcatccaagtaagtaa |
13500194 |
T |
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| Q |
319 |
atgaattcaaacagcattgtaaaaacaatgcaaataagctctcaaaacacctatacccataacatttcaccttttcaagta |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13500195 |
atgaattcaaacagcattgtaaaaacaatgcaaataagctctcaaaacacctatacccataacatttcaccttttcaagta |
13500275 |
T |
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