View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_18 (Length: 411)
Name: NF14267_low_18
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 29979227 - 29979316
Alignment:
| Q |
214 |
aagttgaagtttcgattaccatgaacccaaatatcattaatgtgaagatgagaatcttgttgttccattagaggcatcatatcacataaa |
303 |
Q |
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| T |
29979227 |
aagttgaagtttcaattaccttgaacccaaatatcattaatgtaaagatgagaatcttgttgttccactagaggcatcctgtcacataaa |
29979316 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 310 - 384
Target Start/End: Original strand, 29979359 - 29979433
Alignment:
| Q |
310 |
cctctccctacatgagtgattaatattatatgcatcactttcaatttattatttttcactttacattcattataa |
384 |
Q |
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| T |
29979359 |
cctctccctacatatgtgattaatattacatgcatcactttcaatttattatttttcattttacattcattataa |
29979433 |
T |
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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 71 - 303
Target Start/End: Complemental strand, 41414906 - 41414669
Alignment:
| Q |
71 |
agtattgtccaaaatccaagagtaagatgacttagtagtatatgtgacaaaaatagaaggtcttcaaataagaatgtct--attatcttcattaataaac |
168 |
Q |
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| T |
41414906 |
agtattgtccaaaatcctagagtaaactgacttggtgatataggtgccataaatagaaggtttccaaataagaatgtcttcaatatcttcattaataaac |
41414807 |
T |
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| Q |
169 |
ac-tttgatggag--atcttaatataaggagggatgtcattggagattaagttgaagtttcgattaccatgaacccaaatatcattaatgtgaagatgag |
265 |
Q |
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| T |
41414806 |
acatttgcaagctctatgttaacaaaagaagggacgtcaacagagattaagtgtaagttccaattaccatgaacacaaatatctttaatgtgaagacaag |
41414707 |
T |
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| Q |
266 |
aatcttgttgttccattagaggcatcatatcacataaa |
303 |
Q |
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| T |
41414706 |
aatcttgttgttccactagaggtatcttatcacataaa |
41414669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 376
Target Start/End: Original strand, 32945027 - 32945075
Alignment:
| Q |
328 |
attaatattatatgcatcactttcaatttattatttttcactttacatt |
376 |
Q |
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| T |
32945027 |
attaatatcatgtgtatcactttgaagttattatttttcactttacatt |
32945075 |
T |
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