View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_19 (Length: 406)
Name: NF14267_low_19
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 45393105 - 45393478
Alignment:
| Q |
13 |
aatatgaattctatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctcaagtaattattagtag |
112 |
Q |
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| T |
45393105 |
aatatgaattctatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctcaagtaattattagtag |
45393204 |
T |
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| Q |
113 |
caagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtggcgaaaacta |
212 |
Q |
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| T |
45393205 |
caagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtggtgaaaacta |
45393304 |
T |
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| Q |
213 |
tcaatctttcccatccaaatgcagactatgaaactcgattaccatctattaacaa--atataaaagattcctgtgcagtagttaccacaagataacaagt |
310 |
Q |
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| T |
45393305 |
tcaatctttcccatccaaatgcagactatgaaacctgattaccatctattaacaaatatataaaagattcctgtgcagtagttaccacaagataacaagt |
45393404 |
T |
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| Q |
311 |
ttacaatcaacatcaatgaaaaaataagtgtcatgttatcatagaggttcttctattattccaatctaattgtgaaact |
389 |
Q |
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| T |
45393405 |
ttacaatcaacatcaatgaaaaaataag-----tgttatcatagaggttcttctattattccaatctaattgtgaaact |
45393478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 52739838 - 52739913
Alignment:
| Q |
213 |
tcaatctttcccatccaaatgcagactatgaaactcgattaccatctatt-aacaaatataaaagattcctgtgca |
287 |
Q |
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| T |
52739838 |
tcaacctttcccacccaaatgcagactatgaaattcaataaccatatgttaaacaaatataaatgattcctatgca |
52739913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 52739739 - 52739789
Alignment:
| Q |
99 |
gtaattattagtagcaagcactttaacgctacaataggaaagttcaatatg |
149 |
Q |
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| T |
52739739 |
gtaattattagcagcaaacactttaaaactacaacaggaaagttcaatatg |
52739789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 31667166 - 31667289
Alignment:
| Q |
103 |
ttattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtg |
202 |
Q |
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| T |
31667166 |
ttattagcggcaagcactttaaaactacaccaggaaagttcaatatgcctgt-cccttctgataagt---gcaggatcaagcttctacacattattattt |
31667261 |
T |
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| Q |
203 |
gcgaaaactatcaatctttcccatccaa |
230 |
Q |
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|||||||| ||||| |||| |||||||| |
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| T |
31667262 |
gcgaaaacaatcaaccttttccatccaa |
31667289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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