View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14267_low_2 (Length: 770)

Name: NF14267_low_2
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14267_low_2
NF14267_low_2
[»] chr7 (1 HSPs)
chr7 (17-733)||(2860467-2861183)


Alignment Details
Target: chr7 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 17 - 733
Target Start/End: Original strand, 2860467 - 2861183
Alignment:
Q  17 cacagagttataacaaaaagcatcattatcattatcactaccacaatactcactttccaaaaccttcaatgctaaatcaacatgaaaacacttcgaatac 116  Q
    ||||||||||||||||||||||||||||||||||||| ||  || || ||||||||| ||||| | ||||||||||||||||||||||||||||||||||    
T  2860467 cacagagttataacaaaaagcatcattatcattatcaatattaccatgctcactttctaaaacttgcaatgctaaatcaacatgaaaacacttcgaatac 2860566  T
Q  117 atatgaacaagagcacttttcacaaaatgatgaaaaactaatccaaatttaaacaaaaacccatgacactgcattccttcaaaaactctcccactatgag 216  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2860567 atatgaacaagagaacttttcacaaaatgatgaaaaaccaatccaaatttaaacaaaaacccatgacactgcattccttcaaaaactctcccactatgag 2860666  T
Q  217 cacaagcagaaagaacagtcgtaaacacatactcattcggttgatataactccgaaaccatattcttaaacaatttaacaactaccaaatgttcaccact 316  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2860667 cacaagcagaaagaacagtagtaaacacatactcattcggttgatacaacgacgaaaccatattcttaaacaatttaacaacttccaaatgttcaccact 2860766  T
Q  317 atgcaaataaccacccattaaagcattataagaaacaacgcttctaagagacatttcatcgaacaggtaacgcgcgagacggagttttgaacatttgaca 416  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2860767 atgcaaataaccacccattaaaacattataagaaacaacgcttctaagagacatttcatcgaacaggtaacgcgcgagacggagttttgaacatttgaca 2860866  T
Q  417 tagagattgatgagggagttaagttgaataatgttggattcacggtatgaatgatgggttgaagattggttgcgaatgagtaactgggtatgtatggatt 516  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2860867 tagagattgatgagggagttaagttgaataatgttgaattcacggtatgaatgatgggttgaagattggttgcgaatgagtaactgggtatgtatggatt 2860966  T
Q  517 tgccaaagttgagatttttagtatttgccgagagttttaagaggtgtaaaagttcttcaagtgatgggagatatcttgaatagaaagctaccatagtgtt 616  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2860967 tgccaaagttgagatttttagtatttgcagagagttttaagaggtgtaaaagttcttcaagtgatgggagatatcttgaatagaaagctaccatagtgtt 2861066  T
Q  617 agttttaggtaatttctggtgaaaacaattgaactaggttatatttgaaggagggaaggtaactttgagggaggtgtagaaagcaaattacataaaaatc 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2861067 agttttaggtaatttctggtgaaaacaattgaactaggttatatttgaaggagggaaggtaactttgagggaggtgtagaaagcaaattacataaaaatc 2861166  T
Q  717 ttactttttatttcctc 733  Q
    ||||||||| |||||||    
T  2861167 ttactttttttttcctc 2861183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University