View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_20 (Length: 401)
Name: NF14267_low_20
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 50364258 - 50364634
Alignment:
| Q |
13 |
aatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgct |
112 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50364258 |
aatatcccacattatcaatggagctaagatacccacttcaaccactaaggtcgctatgatcttcgaagtattatctaaaccaaccttgtgacacattgct |
50364357 |
T |
|
| Q |
113 |
tgaacatcactaaactcacaatcagtatgttattcaactcaacgaggacatatcattagacaa-taaaaaatggttcatcttcattgcaataacggcaag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
50364358 |
tgaacatcactaaactcacaatcagtatgttattcaactcaacgaggacatatcattagacaaataaaaaatggttcatcttcattgcaataagggcaag |
50364457 |
T |
|
| Q |
212 |
tgggcgttaaaagaactccttgatgacacaagatacttctactggggagagacttgtggcatgttcgccataataaaaattgcacactaccttagagatg |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50364458 |
tgggagttaaaagaactccttgatgacacaagatacttctactggggagagacttgtggcatgttcgccataataaaaattgcacactaccttagagatg |
50364557 |
T |
|
| Q |
312 |
taacttctaaatccatgcccaagattcttgagaaatttcattatgatgttgtgataaacgccaagtatattcacttt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50364558 |
taacttctaaatccatgcccaagattcttgagaaatttcattatgatgttgtgataaacgccaagtatattcacttt |
50364634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 41405507 - 41405144
Alignment:
| Q |
13 |
aatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgct |
112 |
Q |
| |
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||||| |||| |||||||| ||| ||||||||||||| || ||||||||||| | |||||| ||||||||||||| |||| |||| | |||||||||| |
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| T |
41405507 |
aatattccacgttatcaatagagctaagatacccactccatccactaaggttatgaggatctttgaagtattgtctagaccagccttctcacacattgct |
41405408 |
T |
|
| Q |
113 |
tgaacatcactaaactcacaatcagtatgttattcaactcaacgaggacatatcattagacaataaaaaatggtt-catcttcattgcaataacggcaag |
211 |
Q |
| |
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|||||||| ||||||||| | ||||| ||||||| | ||| |||| ||||||||||| || ||| ||| ||||||||||||| || |||||| |
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| T |
41405407 |
tgaacatccctaaactcatagtcagtcaaaatttcaactgagcga---cataacattagacaatgaacaatagtttcatcttcattgcagaaagggcaag |
41405311 |
T |
|
| Q |
212 |
tgggcgttaaaagaactccttgatgacacaagatacttctactggggagagacttgtggcatgttcgccataataaaaattgcacactaccttagagatg |
311 |
Q |
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| | ||||||||| |||| | ||||||||| |||||| || | || |||||||||||||||||| ||||||| | |||||||| |||| || ||||||| |
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| T |
41405310 |
tagtcgttaaaaggactcttcgatgacacacaatacttttagttgg-agagacttgtggcatgtt-gccataagagaaattgcaaactagctgagagatg |
41405213 |
T |
|
| Q |
312 |
taacttctaaatccatgcccaagattcttgagaaatttcattatgatgttgtgataaacgccaagtata |
380 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
41405212 |
taacttccaaatccactaccaagatccttgagaaatttcattatgatgttgagataaaagccaagtata |
41405144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 10794977 - 10794697
Alignment:
| Q |
13 |
aatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgct |
112 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||| ||||||||||||| | ||||||||||||| |||| | |
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|
| T |
10794977 |
aatattccacattatcaatggagctaagatacccacttcatccactaatgtcgctaggatctttgaagtattgtctagaacaaccttgtgacaaattgat |
10794878 |
T |
|
| Q |
113 |
tgaacatcactaaactcacaatcagtatgttattcaactcaacgaggacatatcattagacaataaaaaat-ggttcatcttcattgcaataacggcaag |
211 |
Q |
| |
|
|| ||||||||||| |||||| ||| |||||| | | |||| || |||||||||||||||||| | |||||||||| | | || |||||| |
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|
| T |
10794877 |
agagcatcactaaacccacaattagtccaaatttcaaccgagcatggacgtaacattagacaataaaaaatagtttcatcttcaccgtagaaagggcaag |
10794778 |
T |
|
| Q |
212 |
tgggcgttaaaagaactccttgatgacacaagatacttctactggggagagacttgtggcatgttcgccataataaaaatt |
292 |
Q |
| |
|
| ||||||||||| ||| | |||||||||||||||||||| | |||||||| |||||||||||| ||||||| ||||||| |
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|
| T |
10794777 |
taggcgttaaaaggacttttcgatgacacaagatacttctaatagggagagaattgtggcatgtttgccataagaaaaatt |
10794697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 15581108 - 15580980
Alignment:
| Q |
234 |
atgacacaagatacttctactggggagagacttgtggcatgttcgccataataaaaattgcacactaccttagagatgtaacttctaaatccatgcccaa |
333 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||||||| | ||||| ||||||||||||||| | |||||| || ||| ||||||| ||| |
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| T |
15581108 |
atgacacaagacacttctagtcgggagagacttgtggcatgtttgtcataagaaaaattgcacactagttgagagatatagattccaaatccacattcaa |
15581009 |
T |
|
| Q |
334 |
gattcttgagaaatttcattatgatgttg |
362 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
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|
| T |
15581008 |
gattcttgagaaatttcatgatgatgttg |
15580980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 15581286 - 15581196
Alignment:
| Q |
37 |
taagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgcttgaacatcactaaac |
127 |
Q |
| |
|
|||||| || |||||| |||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
15581286 |
taagatgcctacttcagccactaagattgctgagatctttgaagtattctctagaccaaccttgtgacacatttcttgaacatcactaaac |
15581196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 50076346 - 50076228
Alignment:
| Q |
13 |
aatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgct |
112 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||| ||||||||||||| | ||||||||||||| |||| | |
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|
| T |
50076346 |
aatattccacattatcaatggagctaagatacccacttcatccactaatgtcgctaggatctttgaagtattgtctagaacaaccttgtgacaaattgat |
50076247 |
T |
|
| Q |
113 |
tgaacatcactaaactcac |
131 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
50076246 |
agaacatcactaaactcac |
50076228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 25584124 - 25584082
Alignment:
| Q |
21 |
acattatcaatggagttaagatacccacttcaaccactaaggt |
63 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||| ||||||| |
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| T |
25584124 |
acattatcaatggagctaagatacccacttcgaccgctaaggt |
25584082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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