View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14267_low_21 (Length: 394)

Name: NF14267_low_21
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14267_low_21
NF14267_low_21
[»] chr4 (11 HSPs)
chr4 (185-367)||(2317946-2318122)
chr4 (13-141)||(2319166-2319294)
chr4 (36-166)||(37861188-37861318)
chr4 (35-164)||(16692101-16692230)
chr4 (17-188)||(19399835-19400007)
chr4 (36-166)||(46963854-46963984)
chr4 (39-166)||(44540114-44540242)
chr4 (33-166)||(30468666-30468801)
chr4 (74-148)||(46362770-46362844)
chr4 (35-133)||(45891824-45891923)
chr4 (134-172)||(2319103-2319141)
[»] chr8 (6 HSPs)
chr8 (35-166)||(7042598-7042729)
chr8 (74-166)||(7637601-7637693)
chr8 (35-146)||(114113-114224)
chr8 (35-151)||(18181692-18181807)
chr8 (74-166)||(39699443-39699536)
chr8 (76-171)||(43108666-43108760)
[»] chr7 (9 HSPs)
chr7 (35-164)||(16831589-16831718)
chr7 (36-170)||(30003764-30003898)
chr7 (49-166)||(47375802-47375918)
chr7 (36-171)||(12879672-12879808)
chr7 (78-166)||(21212703-21212791)
chr7 (60-163)||(39511188-39511291)
chr7 (91-166)||(42244452-42244525)
chr7 (88-161)||(38850519-38850592)
chr7 (112-164)||(33342566-33342618)
[»] chr6 (4 HSPs)
chr6 (35-171)||(357166-357302)
chr6 (34-164)||(31954809-31954939)
chr6 (40-166)||(3768074-3768200)
chr6 (37-102)||(33558275-33558340)
[»] chr1 (11 HSPs)
chr1 (35-171)||(34462742-34462878)
chr1 (77-166)||(1640218-1640307)
chr1 (76-166)||(18919283-18919373)
chr1 (76-171)||(37705333-37705428)
chr1 (49-151)||(40619520-40619622)
chr1 (110-158)||(9424543-9424591)
chr1 (47-166)||(47853506-47853628)
chr1 (78-152)||(24439162-24439236)
chr1 (104-136)||(2144576-2144608)
chr1 (116-152)||(28924126-28924162)
chr1 (19-133)||(51540737-51540853)
[»] chr2 (6 HSPs)
chr2 (36-166)||(34074148-34074279)
chr2 (39-171)||(20556766-20556897)
chr2 (35-166)||(5577992-5578123)
chr2 (36-167)||(35977313-35977444)
chr2 (50-166)||(26009595-26009712)
chr2 (91-133)||(2126221-2126263)
[»] chr5 (5 HSPs)
chr5 (36-166)||(523653-523783)
chr5 (74-166)||(15472838-15472930)
chr5 (38-171)||(5735986-5736120)
chr5 (29-164)||(30240-30375)
chr5 (102-193)||(6825441-6825535)
[»] chr3 (3 HSPs)
chr3 (39-143)||(39625085-39625189)
chr3 (76-166)||(39956177-39956266)
chr3 (36-133)||(11076921-11077018)
[»] scaffold0024 (1 HSPs)
scaffold0024 (88-164)||(33231-33307)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 185 - 367
Target Start/End: Complemental strand, 2318122 - 2317946
Alignment:
Q  185 attttccatgaaataaagacggaagaaaaaagacaaaagcaaataattattcatacataataaaccaaagagaatctgtgtcatccattcattttggtgt 284  Q
    ||||||||| ||||||| | |||||||||||||||||||||||  || ||||||||||||   ||||||||||||||||||||||| |||||||||||||    
T  2318122 attttccataaaataaaaa-ggaagaaaaaagacaaaagcaaa--atgattcatacataa---accaaagagaatctgtgtcatcccttcattttggtgt 2318029  T
Q  285 ttcaacctgaaatgcctcgaaatggaacttgtaaatcttccacaacgactcttcacctctttcaccactctctctccttctcc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2318028 ttcaacctgaaatgcctcgaaatggaacttgtaaatcttccacaacgactcttcacctctttcaccactctctctccttctcc 2317946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 2319294 - 2319166
Alignment:
Q  13 aaaataagggtcatgataacttgggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaa 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2319294 aaaataagggtcatgttaacttgggcacaagttaaggatctaaaagaagaactaaattatgagttttgtattgaaaaaataagtttttaacttttcaaaa 2319195  T
Q  113 cattgaatgcacaatttccaaaaataaat 141  Q
    ||||||||||||||||| |||||||||||    
T  2319194 cattgaatgcacaattttcaaaaataaat 2319166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 37861318 - 37861188
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaa 135  Q
    |||||||||||||||||||||| ||||| |||| ||| ||||||||||||| ||||||| |||||||  |||||| ||||||||||||||||||||||||    
T  37861318 ggcacaagttaaggatctaaaaaaagaattaaaacataagttttgtattgaaaaaataactttttaaactttcaagacattgaatgcacaatttccaaaa 37861219  T
Q  136 ataaatttttacatttaacttctaaacttgt 166  Q
     ||| ||| |||||||   ||||||||||||    
T  37861218 ttaagtttctacatttggtttctaaacttgt 37861188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 16692230 - 16692101
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    |||||||||||||| ||||||||  |||| |||| ||| ||||||||||||| || |||| ||||||||||||||| | |||||||||||||||| ||||    
T  16692230 gggcacaagttaagaatctaaaaagagaaataaaacataagttttgtattgaaaatataaatttttaacttttcaagatattgaatgcacaattttcaaa 16692131  T
Q  135 aataaatttttacatttaacttctaaactt 164  Q
    |||||||||||| ||||  |||||||||||    
T  16692130 aataaatttttatatttggcttctaaactt 16692101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 19400007 - 19399835
Alignment:
Q  17 taagggtcatgataacttgggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacatt 116  Q
    ||||||||||| ||| || ||||||||||||| |||||||| || || |||| ||| | ||||||||||| ||||||||||||||| ||||||| |||||    
T  19400007 taagggtcatgttaa-ttaggcacaagttaagaatctaaaa-aataattaaagcataaattttgtattgaaaaaataagtttttaaattttcaagacatt 19399910  T
Q  117 gaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgtatctt---ggcacaaattaatattt 188  Q
    ||||||||||||||||||||||| ||| || ||||  || |||||||||| ||||   ||||||| |||||||||    
T  19399909 gaatgcacaatttccaaaaataagtttctatatttggctactaaacttgtgtcttaagggcacaagttaatattt 19399835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 46963854 - 46963984
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaa 135  Q
    |||||||||||||||||||||| ||||| |||| ||| ||||||||||||| ||||||| |||||||  |||||| ||||||||||||| ||||||||||    
T  46963854 ggcacaagttaaggatctaaaaaaagaattaaaacataagttttgtattgaaaaaataactttttaaactttcaagacattgaatgcacgatttccaaaa 46963953  T
Q  136 ataaatttttacatttaacttctaaacttgt 166  Q
     ||| ||| |||||||   ||||||||||||    
T  46963954 ttaagtttctacatttggtttctaaacttgt 46963984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 44540114 - 44540242
Alignment:
Q  39 acaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaa-ataagtttttaacttttcaaaacattgaatgcacaatttccaaaaat 137  Q
    |||| |||| |||||||||  |||| ||||  || |||||| |||||| ||| ||||||||||||| |||||| |||| |||||||||||||| ||||||    
T  44540114 acaatttaatgatctaaaaatagaattaaaatataagttttatattgaaaaagataagtttttaacatttcaagacatcgaatgcacaatttctaaaaat 44540213  T
Q  138 aaatttttacatttaacttctaaacttgt 166  Q
    |||||||||| |||  |||||||||||||    
T  44540214 aaatttttacgtttggcttctaaacttgt 44540242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 30468666 - 30468801
Alignment:
Q  33 ttgggcacaagttaaggatctaaaagaa-gaactaaatcatgagttttgtattgagaaaa-taagtttttaacttttcaaaacattgaatgcacaatttc 130  Q
    ||||||||| ||||||||||||||| || ||| ||||  || ||||||||||||| |||| ||| |||||||  |||||| | |||||||| ||||||||    
T  30468666 ttgggcacaggttaaggatctaaaaaaaagaattaaaatataagttttgtattgaaaaaaataactttttaaactttcaacaaattgaatgtacaatttc 30468765  T
Q  131 caaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||| ||| ||| || ||||   ||||||||||||    
T  30468766 caaaattaagtttctatatttggtttctaaacttgt 30468801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 46362770 - 46362844
Alignment:
Q  74 agttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttaca 148  Q
    ||||||||||||| ||||||| |||| ||  |||||| |||||||||||||||||||||||| ||| ||| ||||    
T  46362770 agttttgtattgaaaaaataacttttaaaactttcaagacattgaatgcacaatttccaaaattaagtttctaca 46362844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 45891923 - 45891824
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtatt-gagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaa 133  Q
    |||||||||||||| ||||||||  |||| |||||||| | |||||| || || |||||||| |||||| |||| |  |||||||||||||||| |||||    
T  45891923 gggcacaagttaagaatctaaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattgaatgcacaatctccaa 45891824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 2319141 - 2319103
Alignment:
Q  134 aaataaatttttacatttaacttctaaacttgtatcttg 172  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  2319141 aaataaatttttatatttaccttctaaacttgtatcttg 2319103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 7042729 - 7042598
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||  ||||||||    
T  7042729 gggcacaagttaaggatttaaaagaagaattaaatcatgagttttgtattgaaaaaataagtttttaatttttcaaaacatttaatgcacgttttccaaa 7042630  T
Q  135 aataaatttttacatttaacttctaaacttgt 166  Q
    ||||| ||| |||| |||| ||||||||||||    
T  7042629 aataagtttctacaattaatttctaaacttgt 7042598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 7637693 - 7637601
Alignment:
Q  74 agttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||  ||| || ||||||| ||||||||||||||    
T  7637693 agttttgtattgaaaaaataagtttgtaacttttcaagacattgaatgcacaattttcaaaagaaaaattctacatttgacttctaaacttgt 7637601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 114113 - 114224
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    ||||| |||||||| |||||||||||||| |||| ||| ||||||||||||| ||||||| |||||||  ||||||||||||||||| || | |||||||    
T  114113 gggcaaaagttaagaatctaaaagaagaattaaaacataagttttgtattgaaaaaataaatttttaaactttcaaaacattgaatgtacgacttccaaa 114212  T
Q  135 aataaattttta 146  Q
    | ||| ||||||    
T  114213 attaagttttta 114224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 18181692 - 18181807
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    |||||||||||||| |||||||| || || |||| ||| | |||| |||| | ||||||||||||||| |||| || |||||||||||||||||| ||||    
T  18181692 gggcacaagttaagaatctaaaaaaa-aattaaagcataaattttatatttaaaaaataagtttttaattttttaagacattgaatgcacaattttcaaa 18181790  T
Q  135 aataaatttttacattt 151  Q
    || || ||| |||||||    
T  18181791 aacaagtttctacattt 18181807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 39699536 - 39699443
Alignment:
Q  74 agttttgtattgagaaaataagtttttaac-ttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||||| ||||| ||||||||||| |||| ||||||| ||||| |||| ||||||| ||||||||||||  ||||||| ||||||||| ||||    
T  39699536 agttttgaattgaaaaaataagtttgtaacgttttcaagacattaaatgtacaattttcaaaaataaattactacatttgacttctaaatttgt 39699443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 43108666 - 43108760
Alignment:
Q  76 ttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgtatctt 171  Q
    ||||||||||| |||||||||||||||  |||||| | ||| |||||||||||| ||||| ||| |||||| |||   ||||||||||||||||||    
T  43108666 ttttgtattga-aaaataagtttttaaactttcaagatattaaatgcacaattttcaaaattaagtttttatattcggcttctaaacttgtatctt 43108760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 16831589 - 16831718
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    ||||||||||||||||| |||||  |||| |||| ||| ||||||||||||| || |||||||||||||||||||| | ||||||||||||||||| |||    
T  16831589 gggcacaagttaaggatgtaaaaatagaaataaaacataagttttgtattgaaaatataagtttttaacttttcaagatattgaatgcacaatttctaaa 16831688  T
Q  135 aataaatttttacatttaacttctaaactt 164  Q
    |||||||||||||||||| |||||| ||||    
T  16831689 aataaatttttacatttagcttctatactt 16831718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 30003898 - 30003764
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaa 135  Q
    ||||||||||||  |||||||| ||||| |||| ||| | ||||||||||| |||||||||||||||||||| || | ||||||| || |||||||||||    
T  30003898 ggcacaagttaaaaatctaaaaaaagaattaaaacataaattttgtattgaaaaaataagtttttaactttttaagatattgaatacataatttccaaaa 30003799  T
Q  136 ataaatttttacatttaacttctaaacttgtatct 170  Q
    |||||||| ||||| | ||| ||||| ||||||||    
T  30003798 ataaatttctacatatgactactaaatttgtatct 30003764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 47375802 - 47375918
Alignment:
Q  49 gatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttaca 148  Q
    ||||||||| ||||| |||| ||| ||||||||||||| ||||||| |||||||  |||||| |||||||||||||||||||||||||||| ||| ||||    
T  47375802 gatctaaaaaaagaattaaaacataagttttgtattga-aaaataactttttaatctttcaagacattgaatgcacaatttccaaaaataagtttctaca 47375900  T
Q  149 tttaacttctaaacttgt 166  Q
    |||   ||||||||||||    
T  47375901 tttggattctaaacttgt 47375918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 12879672 - 12879808
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaa 135  Q
    |||| ||||||||||||||| | ||||| |||| ||| ||||||||||| | ||||||| || ||||  |||||| ||||| |||||||||||||||| |    
T  12879672 ggcataagttaaggatctaacaaaagaattaaaacataagttttgtattaaaaaaataaattgttaaactttcaagacattaaatgcacaatttccaaga 12879771  T
Q  136 ataaatttt-tacatttaacttctaaacttgtatctt 171  Q
     |||||||| ||||||||||||| |||||||| ||||    
T  12879772 ttaaattttctacatttaacttccaaacttgtgtctt 12879808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 21212703 - 21212791
Alignment:
Q  78 ttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||| || | |||||||||    
T  21212703 ttgtattgaaaaaataagtttttaacttttcaaaacattgaatgtataattttcaaaaataagtttttacatttgacatttaaacttgt 21212791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 39511291 - 39511188
Alignment:
Q  60 agaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttcta 159  Q
    |||| |||| ||| ||||||||||| | || |||| |||| |||||||||| ||||||||||||||||||| |||||||| ||||||||| |  ||||||    
T  39511291 agaaataaaacataagttttgtattaaaaatataaattttcaacttttcaagacattgaatgcacaatttctaaaaataagtttttacatctggcttcta 39511192  T
Q  160 aact 163  Q
    ||||    
T  39511191 aact 39511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 42244452 - 42244525
Alignment:
Q  91 ataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||||||||||| |||  | |||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||    
T  42244452 ataagtttttaaccttt--atacattgaatgtacaatttccaaaaataagtttctacatttaaattctaaacttgt 42244525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 38850592 - 38850519
Alignment:
Q  88 aaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaa 161  Q
    |||||||||||||||  |||||||||||||||||||||||||  || |  |||||| ||||||| |||||||||    
T  38850592 aaaataagtttttaaactttcaaaacattgaatgcacaatttttaacataaaatttctacatttgacttctaaa 38850519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 33342566 - 33342618
Alignment:
Q  112 acattgaatgcacaatttccaaaaataaatttttacatttaacttctaaactt 164  Q
    ||||||||||||||||||  ||||||| |||| || ||||||||||| |||||    
T  33342566 acattgaatgcacaatttttaaaaatatatttctaaatttaacttcttaactt 33342618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 357302 - 357166
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    ||||||||||||| ||||||||| | ||| |||| ||| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||    
T  357302 gggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaa 357203  T
Q  135 aataaatttttacatttaacttctaaacttgtatctt 171  Q
    ||||||||| |||||||  |||||||| |||| ||||    
T  357202 aataaatttctacatttggcttctaaatttgtgtctt 357166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 31954939 - 31954809
Alignment:
Q  34 tgggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaa 133  Q
    |||||||||||||| | ||||||| | ||| |||| ||| ||||||||||||| ||||||||||||||| ||||||| |||||| ||||| |||||| ||    
T  31954939 tgggcacaagttaaagttctaaaaaaggaattaaaacataagttttgtattgaaaaaataagtttttaaattttcaagacattgtatgcataatttctaa 31954840  T
Q  134 aaataaatttttacatttaacttctaaactt 164  Q
    || ||| |||||||||||  |||||||||||    
T  31954839 aattaagtttttacatttggcttctaaactt 31954809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 3768200 - 3768074
Alignment:
Q  40 caagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaa-taagtttttaacttttcaaaacattgaatgcacaatttccaaaaata 138  Q
    ||||||||| |||||||| || || |||| ||| |  |||||||||| |||| | ||||||||||||||||| | ||||||| |||||||||||||||||    
T  3768200 caagttaagaatctaaaaaaa-aattaaagcataaactttgtattgaaaaaaatgagtttttaacttttcaagatattgaatacacaatttccaaaaata 3768102  T
Q  139 aatttttacatttaacttctaaacttgt 166  Q
    | |||||||| || ||| ||||||||||    
T  3768101 agtttttacacttgactactaaacttgt 3768074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 33558275 - 33558340
Alignment:
Q  37 gcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaa 102  Q
    ||||||||||| ||||||||| ||||| |||| ||| | ||||||||||   ||||||||||||||    
T  33558275 gcacaagttaaagatctaaaaaaagaattaaaacataaattttgtattgtataaataagtttttaa 33558340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 34462878 - 34462742
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    ||||||||||||||| | ||||| ||||| |||| ||| | ||||||||||| || ||||||||| ||| |||||| |||||||||||||||||| ||||    
T  34462878 gggcacaagttaaggttttaaaaaaagaattaaaacataacttttgtattgaaaatataagttttcaacctttcaagacattgaatgcacaattttcaaa 34462779  T
Q  135 aataaatttttacatttaacttctaaacttgtatctt 171  Q
    ||||||||| ||||||| |||||||||||||| ||||    
T  34462778 aataaatttctacatttgacttctaaacttgtgtctt 34462742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 1640218 - 1640307
Alignment:
Q  77 tttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    |||||||||| |||||||||||||||  |||||| ||||||||||||||||||  |||| ||| ||| ||||||||||||||||||||||    
T  1640218 tttgtattgaaaaaataagtttttaaactttcaagacattgaatgcacaatttttaaaattaagtttctacatttaacttctaaacttgt 1640307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 18919373 - 18919283
Alignment:
Q  76 ttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||||||||| || |||| |||||||| |||||| |||||||||||||||||| ||||||||| ||| |||||||  ||| |||||||||    
T  18919373 ttttgtattgaaaatataaatttttaacctttcaagacattgaatgcacaattttcaaaaataagtttctacatttggcttataaacttgt 18919283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 37705428 - 37705333
Alignment:
Q  76 ttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgtatctt 171  Q
    ||||||||||  |||||||| ||||||  |||||||||||||||||||  ||||  |||| | | ||| ||||||| |||||||||||||| ||||    
T  37705428 ttttgtattggaaaaataagattttaatctttcaaaacattgaatgcattatttttaaaatttagtttctacatttgacttctaaacttgtgtctt 37705333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 40619520 - 40619622
Alignment:
Q  49 gatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttaca 148  Q
    ||||||||| | ||| |||| ||| | ||||||||| | ||||||| |||||||  ||| || | |||||||||||||||| ||||| ||| ||||||||    
T  40619520 gatctaaaaaaggaattaaaacataatttttgtattaaaaaaataaatttttaaacttttaagatattgaatgcacaattttcaaaattaagtttttaca 40619619  T
Q  149 ttt 151  Q
    |||    
T  40619620 ttt 40619622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 9424591 - 9424543
Alignment:
Q  110 aaacattgaatgcacaatttccaaaaataaatttttacatttaacttct 158  Q
    |||||||||||||||||||| |||||| ||| || ||||||||||||||    
T  9424591 aaacattgaatgcacaatttgcaaaaaaaaacttctacatttaacttct 9424543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 47853506 - 47853628
Alignment:
Q  47 aggatctaaaagaagaactaaatcatgagttttgt--attgagaaaa-taagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaattt 143  Q
    ||||||||||| | ||| |||| ||| ||||||||  ||||| |||| ||| |||||||  ||||||||||||  |||||||||||| |||| ||| | |    
T  47853506 aggatctaaaaaaggaattaaaacataagttttgtgtattgaaaaaaataaatttttaaactttcaaaacattatatgcacaatttctaaaattaagtct 47853605  T
Q  144 ttacatttaacttctaaacttgt 166  Q
     ||||||| |||| |||||||||    
T  47853606 ctacattttacttataaacttgt 47853628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 24439162 - 24439236
Alignment:
Q  78 ttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacattta 152  Q
    ||||||| | |||||||||||||||  ||| || |   |||||||||||||| ||||| ||||||||||||||||    
T  24439162 ttgtattaaaaaaataagtttttaaacttttaagattatgaatgcacaattttcaaaattaaatttttacattta 24439236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Complemental strand, 2144608 - 2144576
Alignment:
Q  104 ttttcaaaacattgaatgcacaatttccaaaaa 136  Q
    |||||||||||||||||||||||||| ||||||    
T  2144608 ttttcaaaacattgaatgcacaattttcaaaaa 2144576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 28924126 - 28924162
Alignment:
Q  116 tgaatgcacaatttccaaaaataaatttttacattta 152  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  28924126 tgaatgcacaattttcaaaattaaatttttacattta 28924162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 51540853 - 51540737
Alignment:
Q  19 agggtcatgataacttggg-cacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaat-aagtttttaacttttcaaaacatt 116  Q
    ||||||||| ||||||||| |||||||||| |||||||||   ||| |||| ||| |||||||  || | ||||| || |||| ||||||| |||| | |    
T  51540853 agggtcatgctaacttggggcacaagttaatgatctaaaaatggaattaaaacataagttttgacttaacaaaataaaattttaaactttttaaaataat 51540754  T
Q  117 gaatgcacaatttccaa 133  Q
    |||| ||||||||||||    
T  51540753 gaatacacaatttccaa 51540737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 34074279 - 34074148
Alignment:
Q  36 ggcacaagttaaggatctaaaagaag-aactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    ||||||||||||| |||||||| ||| || |||| ||| ||||||||||||| |||||||| ||||||  |||||||||||||||||||| |||||||||    
T  34074279 ggcacaagttaagaatctaaaaaaaggaattaaaacataagttttgtattgaaaaaataagcttttaaactttcaaaacattgaatgcacgatttccaaa 34074180  T
Q  135 aataaatttttacatttaacttctaaacttgt 166  Q
    |  |||||| ||||||||||||||||||||||    
T  34074179 atgaaatttctacatttaacttctaaacttgt 34074148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 20556897 - 20556766
Alignment:
Q  39 acaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaata 138  Q
    |||||||||| |||||||||||||| |||| ||| ||||||||||||| |||||||| |||||| ||||||| ||||||||||||| |||||||||| ||    
T  20556897 acaagttaagaatctaaaagaagaattaaaacataagttttgtattgaaaaaataag-ttttaaattttcaagacattgaatgcacgatttccaaaatta 20556799  T
Q  139 aatttttacatttaacttctaaacttgtatctt 171  Q
    | ||| ||||||||  |||||||||||| ||||    
T  20556798 agtttctacatttagtttctaaacttgtgtctt 20556766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 5578123 - 5577992
Alignment:
Q  35 gggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaa 134  Q
    |||||||||||||||||||||||  |||| |||| ||| | ||||||||||| |||||||||||||||  |||||| | ||| |||||||||||||||||    
T  5578123 gggcacaagttaaggatctaaaaagagaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagatattaaatgcacaatttccaaa 5578024  T
Q  135 aataaatttttacatttaacttctaaacttgt 166  Q
    | |||||||  ||||||   ||||||||||||    
T  5578023 attaaatttcgacatttggtttctaaacttgt 5577992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 35977444 - 35977313
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaa 135  Q
    |||||||||||||||||||||| ||||| ||||  || |||||| |||||| ||||||| ||||||| ||||||| |||||||||||| |||||| ||||    
T  35977444 ggcacaagttaaggatctaaaaaaagaattaaaatataagttttatattgaaaaaataactttttaaattttcaagacattgaatgcataatttctaaaa 35977345  T
Q  136 ataaatttttacatttaacttctaaacttgta 167  Q
     ||| ||||||||||  | || ||||||||||    
T  35977344 ttaagtttttacattcgatttttaaacttgta 35977313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 26009595 - 26009712
Alignment:
Q  50 atctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaa-acattgaatgcacaatttccaaaaataaatttttaca 148  Q
    |||||||| ||||| |||| ||| ||||||||||||  |||||||||||||||  ||||| | ||||||||||||| |||||||||| || |||| ||||    
T  26009595 atctaaaaaaagaattaaaacataagttttgtattggaaaaataagtttttaaactttcagagacattgaatgcacgatttccaaaattatatttctaca 26009694  T
Q  149 tttaacttctaaacttgt 166  Q
    |||| |||||||||||||    
T  26009695 tttagcttctaaacttgt 26009712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 2126221 - 2126263
Alignment:
Q  91 ataagtttttaacttttcaaaacattgaatgcacaatttccaa 133  Q
    |||||||||||| |||| |||| ||||||||||||||||||||    
T  2126221 ataagtttttaaatttttaaaatattgaatgcacaatttccaa 2126263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 523783 - 523653
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaa 135  Q
    |||||||||||||| ||||||| ||||| |||| ||| | ||||||||||| || |||| |||||||| |||||| ||||| |||||||||||| |||||    
T  523783 ggcacaagttaaggttctaaaaaaagaattaaaacataacttttgtattgaaaatataaatttttaacctttcaagacattaaatgcacaattttcaaaa 523684  T
Q  136 ataaatttttacatttaacttctaaacttgt 166  Q
    ||||||||||| ||||  |||||||||||||    
T  523683 ataaatttttatatttggcttctaaacttgt 523653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 15472930 - 15472838
Alignment:
Q  74 agttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    ||||||||||||| ||||||||||||||| |||| || | |||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  15472930 agttttgtattgaaaaaataagtttttaatttttaaagatattgaatgcacaatttccaaaaataagtttctacatttaacttctaaacttgt 15472838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 5735986 - 5736120
Alignment:
Q  38 cacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaa-taagtttttaacttttcaaaacattgaatgcacaatttccaaaaa 136  Q
    ||||||||||| |||||||| ||||| |||| |||   |||| |||||| |||| |||||||||||||||| || |||||||||||||||||||||||||    
T  5735986 cacaagttaagaatctaaaaaaagaattaaaacatagattttttattgaaaaaaataagtttttaacttttgaagacattgaatgcacaatttccaaaaa 5736085  T
Q  137 taaatttttacatttaacttctaaacttgtatctt 171  Q
    ||| ||| |||||||  || |||||||||||||||    
T  5736086 taagtttctacatttggctactaaacttgtatctt 5736120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 30375 - 30240
Alignment:
Q  29 taacttgggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatt 128  Q
    ||||||| |||||||||||  ||| |||| ||||| ||||  || ||||||||||||| |||  |||| |||||| |||||| |||||||||| ||||||    
T  30375 taacttgtgcacaagttaaaaatccaaaaaaagaattaaaatataagttttgtattgaaaaataaagtgtttaacctttcaagacattgaatggacaatt 30276  T
Q  129 tccaaaaataaatttttacatttaacttctaaactt 164  Q
    | ||||| | ||||| |||||||  ||||| |||||    
T  30275 ttcaaaattcaatttctacatttggcttcttaactt 30240  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 6825441 - 6825535
Alignment:
Q  102 acttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgtatctt---ggcacaaattaatattttccat 193  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||| |||  ||| |||||||||  |||   |||||||||||| |||||||||    
T  6825441 acttttcaagacattgaatgcacaattttcaaaaataagtttttacgtttggcttttaaacttgtgccttaagggcacaaattaacattttccat 6825535  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 39625085 - 39625189
Alignment:
Q  39 acaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaata 138  Q
    ||||||||||||||||||| ||||| |||| ||| | ||||||||| | |||||||| |||||||||||||| ||||| |||||||||||| ||||||||    
T  39625085 acaagttaaggatctaaaaaaagaattaaaacataaattttgtattcaaaaaataagattttaacttttcaagacattaaatgcacaattttcaaaaata 39625184  T
Q  139 aattt 143  Q
    |||||    
T  39625185 aattt 39625189  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 39956177 - 39956266
Alignment:
Q  76 ttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaacttgt 166  Q
    |||| |||||| || |||||||||||||||||||  |||||||||||||||||| ||||||||||||| ||| |||  |||||||||||||    
T  39956177 ttttatattgaaaatataagtttttaacttttcatgacattgaatgcacaattttcaaaaataaatttctac-tttggcttctaaacttgt 39956266  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 11076921 - 11077018
Alignment:
Q  36 ggcacaagttaaggatctaaaagaagaactaaatcatgagttttgtattgagaaaataagtttttaacttttcaaaacattgaatgcacaatttccaa 133  Q
    ||||||||||||| ||||||||   ||| |||| ||| | |||||| |||| || ||||| |||||| |||  |||| ||||| ||||||||||||||    
T  11076921 ggcacaagttaagaatctaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgattgcacaatttccaa 11077018  T

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Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 33231 - 33307
Alignment:
Q  88 aaaataagtttttaacttttcaaaacattgaatgcacaatttccaaaaataaatttttacatttaacttctaaactt 164  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||| | || |||||||||||||||||||||    
T  33231 aaaaaaagtttttaacctttcaaaacattgaatgcacaattttcaaaaattagttattacatttaacttctaaactt 33307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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