View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_22 (Length: 375)
Name: NF14267_low_22
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 33 - 359
Target Start/End: Complemental strand, 37045510 - 37045184
Alignment:
| Q |
33 |
actgcaaaatggtttgtcttttgtgtttgttgcaggatatgtatgacagtcttagccacaaaattgaagatgtgacacgaaattcagcttcattccaatt |
132 |
Q |
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| T |
37045510 |
actgcaaaatggtttgtcttttgtgtttgttgcaggatatgtatgacaatcttagccacaaaattgaagatgtgacacgaaattcagcttcattccaatt |
37045411 |
T |
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| Q |
133 |
tgagggagaatttgcagtattctcaaatacagaaaaaagaaaccatccaagtataattaaggtaataaatattgcagtaaattaaatgtttctatagagt |
232 |
Q |
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| T |
37045410 |
tgagggagaatttgcagtattctcaaatacagaaaaaagaaaccatccaagtataattaaggtaataaatattgcagtaaattaaatgtttctatagagt |
37045311 |
T |
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| Q |
233 |
acatgttttccttgctttacaattaaacaaattttagcctgtagaaaatttaatttaatatttccacacatcctaaattctggcaagtatttctagttgt |
332 |
Q |
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| T |
37045310 |
acatgttttccttgctttacaattaaacaaattttagcctgtagaaaatttaatttaatatttccacacatcctaaattctggcaagtatttctggttgt |
37045211 |
T |
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| Q |
333 |
tgcattctaaaatgtttgagtattcat |
359 |
Q |
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| T |
37045210 |
tgcattctaaaatgtttgagtattcat |
37045184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 37036171 - 37036001
Alignment:
| Q |
33 |
actgcaaaatggtttgtcttttgtgtttgttgcaggatatgtatgacagtcttagccacaaaattgaagatgtgacacgaaattcagcttcattccaatt |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37036171 |
actgcaaaatggtttgtcttttgtgtttgttgcaggatatgtatgacaatcttagccacaaaattgaagatgtgacacgaaattcaacttcattccaatt |
37036072 |
T |
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| Q |
133 |
tgagggagaatttgcagtattctcaaatacagaaaaaagaaaccatccaagtataattaaggtaataaata |
203 |
Q |
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| T |
37036071 |
tgagggagaatatgcagtgttcctgaatacagaaaaaagaaatcatccaagtatagttaaggtaacaaata |
37036001 |
T |
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