View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_26 (Length: 358)
Name: NF14267_low_26
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 342
Target Start/End: Complemental strand, 26382687 - 26382357
Alignment:
| Q |
22 |
taataagcaacagtttattgagaaccttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatgcactcgtgcatataac |
121 |
Q |
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| T |
26382687 |
taataagcaacagttt-ttgagaaccttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatggactcgtgcatataac |
26382589 |
T |
|
| Q |
122 |
ctgagacatgttttgatcgaagctttt------------tctgaacgatcagaccaaacaaccgtgcaggaacgatctcatgatggttgaaaggaggcat |
209 |
Q |
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|||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
26382588 |
ctgagacacgttttgatcgaagcttttgtttgagctttttctgaacgaccagaccaaacaaccatgcaggaacgatctcatgatggttgaaaggaggcgt |
26382489 |
T |
|
| Q |
210 |
ggtgaaaactatggtggcgaaagaaggcgatgagtggacgacctccacgcctaccgtgatcagtttggttggacatcgcagtaaaacagtggctgtttcc |
309 |
Q |
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| T |
26382488 |
ggtgaaaactatggtggtgaaagaaggcgatgagtggacgacct-cacgcctaccgtgatcagtttggttggatatcgcagtgaaacagtggctgtttcc |
26382390 |
T |
|
| Q |
310 |
gaatcgtgatgttcgattacgattcacaaaatt |
342 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
26382389 |
gaatagtgatgttcgattacgattcacaaaatt |
26382357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 8856504 - 8856840
Alignment:
| Q |
22 |
taataagcaacagtttattgagaaccttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatgcactcgtgc------- |
114 |
Q |
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| T |
8856504 |
taataagcagcagtttattgagaaccttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatggactcgaaataataaa |
8856603 |
T |
|
| Q |
115 |
----atataacctgagacatgttttgatcga------------agctttttctgaacgatcagaccaaacaaccgtgcaggaacgatctcatgatggttg |
198 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||| || ||||| |||||||||| |
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| T |
8856604 |
aaagatataacctgagacatgttttgatcagcgccaaccttttagctttttctgaacgaccggaccaaacaaccgtgcagaaaagatcttatgatggttg |
8856703 |
T |
|
| Q |
199 |
aaaggaggcatggtgaaaactatggtggcgaaagaaggcgatgagtggacgacctccacgcctaccgtgatcagtttggttggacatcgcagtaaaacag |
298 |
Q |
| |
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||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| || ||||| || || || |||||| |
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| T |
8856704 |
aaaggaggcgtggtaaaaactatggctgcgaaagaaggcgatgagtcgacgacctccacacctaccgtgatcagtatgattggatattgctgtgaaacag |
8856803 |
T |
|
| Q |
299 |
tggctgtttccgaatcgtgatgttcgattacgattca |
335 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
8856804 |
tggatgtttccgaatcgtgatgttcgattacgattca |
8856840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 14366722 - 14366385
Alignment:
| Q |
22 |
taataagcaacagtttattgagaaccttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatgcactcgt--------- |
112 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
14366722 |
taataagcagtagtttattgagagtcttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatggactcataaataataa |
14366623 |
T |
|
| Q |
113 |
---gcatataacctgagacatgttttgatcgaa------------gctttttctgaacgatcagaccaaacaaccgtgcaggaacgatctcatgatggtt |
197 |
Q |
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||||||||||||||| || | ||||||| ||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||| |
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| T |
14366622 |
aaaagatataacctgagacacgtatcgatcgaagcttttgtttgagctttttctgaacgaccggaccaaacagccgtgcaggaacgatcttatgatggtt |
14366523 |
T |
|
| Q |
198 |
gaaaggaggcatggtgaaaactatggtggcgaaagaaggcgatgagtggacgacctccacgcctaccgtgatcagtttggttggacatcgcagtaaaaca |
297 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||| || ||||| || || || ||||| |
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| T |
14366522 |
gaaaggaggcgtggtgaaaactatggcggcgaaagaaggcgatgagtcaacgacctccacacctaccgtgttcagtatgattggatattgctgtgaaaca |
14366423 |
T |
|
| Q |
298 |
gtggctgtttccgaatcgtgatgttcgattacgattca |
335 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
14366422 |
gtggctgttttcgaatcgtgatgttcgattacgattca |
14366385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 19576823 - 19577160
Alignment:
| Q |
22 |
taataagcaacagtttattgagaaccttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatgcactcgt--------- |
112 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
19576823 |
taataagcagtagtttattgagagtcttcaattatagtcttcctcatatgcatataaagggttaattgaagaaacgatacgatggactcataaataataa |
19576922 |
T |
|
| Q |
113 |
---gcatataacctgagacatgttttgatcgaagctt------------tttctgaacgatcagaccaaacaaccgtgcaggaacgatctcatgatggtt |
197 |
Q |
| |
|
||||||||||||||| || | ||| ||||||| ||||||||||| | ||||||||| ||||||||||| ||||| ||||||||| |
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| T |
19576923 |
aaaagatataacctgagacacgtatcgatagaagcttttgtttgagctttttctgaacgaccggaccaaacagccgtgcaggaaagatcttatgatggtt |
19577022 |
T |
|
| Q |
198 |
gaaaggaggcatggtgaaaactatggtggcgaaagaaggcgatgagtggacgacctccacgcctaccgtgatcagtttggttggacatcgcagtaaaaca |
297 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||| ||||||| || |||||||| ||||||||| ||||| || ||||| || || || ||||| |
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| T |
19577023 |
gaaaggaggcgtggtgaaaactatggcggcgaaagaaggtgatgagtcaaccacctccacacctaccgtgttcagtatgattggatattgctgtgaaaca |
19577122 |
T |
|
| Q |
298 |
gtggctgtttccgaatcgtgatgttcgattacgattca |
335 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
19577123 |
gtggctgtttttgaatcgtgatgttcgattacgattca |
19577160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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