View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_27 (Length: 356)
Name: NF14267_low_27
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 344
Target Start/End: Original strand, 14833816 - 14834139
Alignment:
| Q |
23 |
aaagtcaaaagctaagcaactatggcaaatgatccaactgaaatcagaattgatgtggagcctcagcccatcaccgctactcccaccacgacgactcatt |
122 |
Q |
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| T |
14833816 |
aaagtcaaaagctaagcaactatggcaaatgatccaactgaaatcagaattgatgtggagcctcagcccatcgccgctactaccaccacgacgactcatt |
14833915 |
T |
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| Q |
123 |
ttactgtcgagtgctttcaaaagttttatcgttcattgcgccggcaagtgacgattgaggtgatcaagattctgctcagtctt-gtgttggagctggact |
221 |
Q |
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| T |
14833916 |
ttactgtcgagtgctttcaaaagttttatcgttcattgcgccggcaggtgacgattgaggtgatcaagattctgctcagtcttggtgttggagctggact |
14834015 |
T |
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| Q |
222 |
tgtgagtaaattttactttgtttttatttatggtttagtcttt-aacgtgtacatatgtttaaactttaaagtgtacaaaattcttgcaggaatatatgt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14834016 |
tgtgagtaaattttactttgtttttatttatggtttagtctttaaacgtgtacatatgtttaaactttaaagtgtacaaaattcttgcaggtatatatgt |
14834115 |
T |
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| Q |
321 |
ttaataagctcgcgtgaggaagaa |
344 |
Q |
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|||||||||||||||||||||||| |
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| T |
14834116 |
ttaataagctcgcgtgaggaagaa |
14834139 |
T |
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