View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14267_low_3 (Length: 732)
Name: NF14267_low_3
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_3 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 369 - 716
Target Start/End: Original strand, 3508791 - 3509136
Alignment:
| Q |
369 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3508791 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
3508890 |
T |
|
| Q |
469 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
568 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3508891 |
gaaaacataacatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
3508990 |
T |
|
| Q |
569 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
668 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3508991 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
3509088 |
T |
|
| Q |
669 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3509089 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
3509136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 3508678 - 3508728
Alignment:
| Q |
237 |
ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3508678 |
ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
3508728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 34518759 - 34518725
Alignment:
| Q |
252 |
ttctatactttgaagaacaaaaacaaaatacatag |
286 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
34518759 |
ttctatactttgaagaacaaaatcaaaatacatag |
34518725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 369 - 716
Target Start/End: Original strand, 9322 - 9667
Alignment:
| Q |
369 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
468 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9322 |
caatcttaacaaaattatcattaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
9421 |
T |
|
| Q |
469 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
568 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9422 |
gaaaatgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttaaaacgtaaattg |
9521 |
T |
|
| Q |
569 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
668 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9522 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
9619 |
T |
|
| Q |
669 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9620 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
9667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 8966 - 9240
Alignment:
| Q |
9 |
gtcgaagaatatgtgctactagatattactagctagtatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagag |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8966 |
gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatat--aataagattagcaagaaagtaggaaaacaaaaggaagcatagag |
9063 |
T |
|
| Q |
109 |
caaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaa |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9064 |
caaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaa |
9163 |
T |
|
| Q |
209 |
ttattagtaaccggttccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
287 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164 |
ttattagtaaccggttcctattcttt--ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
9240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 369 - 716
Target Start/End: Complemental strand, 5538155 - 5537810
Alignment:
| Q |
369 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
468 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5538155 |
caatcttgacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
5538056 |
T |
|
| Q |
469 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
568 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5538055 |
gaaaacataacatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
5537956 |
T |
|
| Q |
569 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
668 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5537955 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
5537858 |
T |
|
| Q |
669 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5537857 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
5537810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 9 - 287
Target Start/End: Complemental strand, 5538515 - 5538237
Alignment:
| Q |
9 |
gtcgaagaatatgtgctactagatattactagctagtatttattagagtaatatata--ataagattagcaagaaagtaagaaaacaaaaggaagcatag |
106 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5538515 |
gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtaggaaaacaaaaggaagcatag |
5538416 |
T |
|
| Q |
107 |
agcaaa-ggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtggga |
205 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5538415 |
agcaaaaggaagtgattg-cgtgtggaaataaacatccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtggga |
5538317 |
T |
|
| Q |
206 |
gaattattagtaaccggttccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
287 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5538316 |
gaattattagtaaccagttcctattcctt--ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
5538237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 369 - 716
Target Start/End: Original strand, 16420610 - 16420955
Alignment:
| Q |
369 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
468 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16420610 |
caatcttaacaaaattatcattaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
16420709 |
T |
|
| Q |
469 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttgaaacgtaaattg |
568 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16420710 |
gaaaatgtagcatgtagagtccttaaactttttctctcttacaaacctatgttataattattattatgaccttaaagtagtaattttaaaacgtaaattg |
16420809 |
T |
|
| Q |
569 |
aaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
668 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420810 |
aaa--caaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagta |
16420907 |
T |
|
| Q |
669 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420908 |
ttttgatgaaattctattttaacgggccatatttgtatgagtttaatc |
16420955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 16420254 - 16420528
Alignment:
| Q |
9 |
gtcgaagaatatgtgctactagatattactagctagtatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagag |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16420254 |
gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatat--aataagattagcaagaaagtaggaaaacaaaaggaagcatagag |
16420351 |
T |
|
| Q |
109 |
caaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaa |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420352 |
caaaggaagtgattggcgtgtggaaataaagatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggagaa |
16420451 |
T |
|
| Q |
209 |
ttattagtaaccggttccnnnnnnnnncttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
287 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420452 |
ttattagtaaccggttcctattcttt--ttcacacacacccctttctatactttgaagaacaaaaacaaaatacatagt |
16420528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 370 - 714
Target Start/End: Original strand, 28383210 - 28383549
Alignment:
| Q |
370 |
aatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgtag |
469 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||||| | || || |||||||| |
|
|
| T |
28383210 |
aatcttaacatagttatcatcaccaagtaagaatcctactaatatttttattgtcctttttattattggagaatcaaaatcacccctcttatttttgtag |
28383309 |
T |
|
| Q |
470 |
aaaacgtagcatgtagagtccttaaactttttctctcttacaaa--cctatgttataattattattatgaccttaaagtagtaattttg-aaacgtaaat |
566 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| || ||| ||| | |||||| ||||||||| || |||||||||||||||||| ||| | ||| |
|
|
| T |
28383310 |
aaaatgtagcatgtagagtccttaaactctttcacttttataaatccttatgtt---cttattattacgatcttaaagtagtaattttgaaaatttgaat |
28383406 |
T |
|
| Q |
567 |
tgaaaacaaaaagatgggattaagaaatcgatgttgctttgttaaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcag |
666 |
Q |
| |
|
|| ||| |||||||||| |||| |||| |||||||||||| ||||||| |||||||||| ||| | |||||| ||||| ||| |||||| | | || |
|
|
| T |
28383407 |
tg--aacgaaaagatggggttaaacaatcagtgttgctttgttgaattttattccaattttca-ttacaactaaaa-ttatacttg-atcattctttaag |
28383501 |
T |
|
| Q |
667 |
tattttgatgaaattctattttaacgggccatatttgtatgagtttaa |
714 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
28383502 |
tattttgaagaaattctatttcaactggccatatttttatgagtttaa |
28383549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 412 - 714
Target Start/End: Original strand, 28387875 - 28388172
Alignment:
| Q |
412 |
tattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgtagaaaacgtagcatgtagagtccttaaactttttctctcttaca |
511 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||| | | || || |||| ||||||||||||||||||||||| ||||||| |||| || ||| | |
|
|
| T |
28387875 |
tatttttattgtcctttttattattggagaatcaaaattacccctcttatttttctagaaaacgtagcatgtagagtc-ttaaactctttcacttttata |
28387973 |
T |
|
| Q |
512 |
aacc--tatgttataattattattatgaccttaaagtagtaattttgaaacgta-aattgaaaacaaaaagatgggattaagaaatcgatgttgctttgt |
608 |
Q |
| |
|
|| | |||||| | ||||||||||| ||||||||||||||||||||| | ||||||| | |||||||||| |||| |||| ||||||||||| |
|
|
| T |
28387974 |
aatccttatgttct---tattattatgatcttaaagtagtaattttgaaaatttgaattgaa--cgaaaagatggggttaaacaatcagtgttgctttgt |
28388068 |
T |
|
| Q |
609 |
taaattttacaccaattttcatttagatctaaaagttatatttgaatcattatctcagtattttgatgaaattctattttaacgggccatatttgtatga |
708 |
Q |
| |
|
| ||||||| |||||||||||||| | |||||| ||||| |||| ||||| | | |||||||||| |||||||||||| ||| |||||||||| ||||| |
|
|
| T |
28388069 |
tgaattttattccaattttcatttacaactaaaa-ttatacttga-tcattctttaagtattttgaagaaattctatttcaactggccatatttttatga |
28388166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 28387571 - 28387621
Alignment:
| Q |
370 |
aatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttat |
420 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
28387571 |
aatcttaacatagttatcatcaccaagtaagaatcctattaatatttttat |
28387621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 19932296 - 19932453
Alignment:
| Q |
45 |
tatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaagtgattggcatgtggaaataaacatcca |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||| |||||| | ||||||||||||||||| |
|
|
| T |
19932296 |
tatttattaaagtaatatataataagattagcaataaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacatcca |
19932395 |
T |
|
| Q |
145 |
cgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19932396 |
cgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
19932453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 7e-51; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 18901508 - 18901672
Alignment:
| Q |
45 |
tatttattagagtaatatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaagtgattggcatgtggaaa-------taa |
137 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||| | ||||||| ||| |
|
|
| T |
18901508 |
tatttattaaagtaatatataataagattagcaagaaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacattaa |
18901607 |
T |
|
| Q |
138 |
acatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18901608 |
acatccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
18901672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 51784783 - 51784714
Alignment:
| Q |
131 |
gaaataaacatccacgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtg |
202 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51784783 |
gaaataaacat--acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtg |
51784714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 51784833 - 51784794
Alignment:
| Q |
45 |
tatttattagagtaatatataataagattagcaagaaagt |
84 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51784833 |
tatttattaaagtaatatataataagattagcaagaaagt |
51784794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
| Q |
16 |
aatatgtgctactagatattactagctagtatttattagagta |
58 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18901445 |
aatatgtgacactagatattactagctagtatttattagagta |
18901487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
| Q |
16 |
aatatgtgctactagatattactagctagtattt |
49 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
51784892 |
aatatgtgccactagatattactagctagtattt |
51784859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 37940512 - 37940370
Alignment:
| Q |
60 |
tatataataagattagcaagaaagtaagaaaacaaaaggaagcatagagcaaaggaagtgattggcatgtggaaataaacatccacgtttcttcccaatc |
159 |
Q |
| |
|
|||||||||||||||||||||||||| | || ||||| ||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
37940512 |
tatataataagattagcaagaaagtaggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatccacgtttcttcccaatc |
37940413 |
T |
|
| Q |
160 |
ccattttccactatgttccatattgttaggaaataagttagtg |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37940412 |
tcattttccactatgttccatatttttaggaaataagttagtg |
37940370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
| Q |
16 |
aatatgtgctactagatattactagctagtatttattagagta |
58 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37940592 |
aatatgtgccactagatattactagctagtatttattagagta |
37940550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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