View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_31 (Length: 349)
Name: NF14267_low_31
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 267
Target Start/End: Complemental strand, 19597557 - 19597305
Alignment:
| Q |
15 |
ttcactgcagccacatcaatcttcactgccaccaaggccattttcattcctgcgaagaagaacgcaatctttaacggagctaccaacacaatccaataca |
114 |
Q |
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| T |
19597557 |
ttcactgcagccacagcaatcttcattgccacgaaggccgttttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaataca |
19597458 |
T |
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| Q |
115 |
ccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgt |
214 |
Q |
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| T |
19597457 |
ccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgt |
19597358 |
T |
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| Q |
215 |
attatgatatggtaccgtattggccactacgaccaccttgttattcttttccg |
267 |
Q |
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| T |
19597357 |
attataatatggtaccgtattggccactacgaccaccttgttactcttttccg |
19597305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
92 |
agctaccaacacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
149 |
Q |
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| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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