View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_34 (Length: 339)
Name: NF14267_low_34
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 37047332 - 37047643
Alignment:
| Q |
17 |
aattaatgtaacagaacacagttaatttttgtttcctaagtaa--------taaaatctgcttcaatatttagtttgggtctgcaaatatttagtatcca |
108 |
Q |
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| T |
37047332 |
aattaatgtaacagaacacagttaattttt-tttcctaattaagttattaataaaatctgcttcaatctttagtttgggtctgcaaatatttagtatcca |
37047430 |
T |
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| Q |
109 |
attcagttaagaataaaagctactatactattatgacatgattttacattagaaaacatggcagctgatatattatcataagaaataaactgaacannnn |
208 |
Q |
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| T |
37047431 |
aatcagttaagaataaaagctactatactattatgacattattttacattagaaaacatggcagctgatatattatcataagaaataaactgaaca-ttt |
37047529 |
T |
|
| Q |
209 |
nnnnngacaaaaaatcgactgaacatatactattaacaatttagatgtgcgtctatatgtagtagaaagaataatgcaaacaatatcaatatgtaaacaa |
308 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37047530 |
tttttgacaaaaaatcgactgaa-------tattaacaatttagatgtgcgtctatatgtagtagaaagaataatgcaaacaatatcaatatgtaaacaa |
37047622 |
T |
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| Q |
309 |
taacagttttctcattctctg |
329 |
Q |
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||||||||||||||||||||| |
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| T |
37047623 |
taacagttttctcattctctg |
37047643 |
T |
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