View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_35 (Length: 335)
Name: NF14267_low_35
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 40313892 - 40314055
Alignment:
| Q |
18 |
atttgtttagttgaaatcattttccagtattttccattgtggtatttccattactgtgtttatacttcaatgaaaaccatgtttatgagtttcgtttttg |
117 |
Q |
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| T |
40313892 |
atttgtttagttgaaatcattttccactattttccattgtggtatttccattactgtgtttatacttcaatgaaaaccatgtttatgagtttcgtttttg |
40313991 |
T |
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| Q |
118 |
tttgtttatgacatgaatatgcatttgtcaaagttgtgttcattactttttgaaaattatattt |
181 |
Q |
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| T |
40313992 |
tttgtttatgacatgaatatgcatttgtcaaagttgtgttcattactttttgaaaattatattt |
40314055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 40299358 - 40299525
Alignment:
| Q |
14 |
atcaatttgtttagttgaaatcattttccagtattttccattgtggtatttccattactgtgtttatacttcaatgaaaaccatgtttatgagtttcgtt |
113 |
Q |
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| T |
40299358 |
atcaatttgtttagttgtaatcattttccactattttccattgtggtatttcgattactgtgtttatacttcattgaaaaccatgtttatgagtttcgtt |
40299457 |
T |
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| Q |
114 |
tttgtttgtttatgacatgaatatgcatttgtcaaagttgtgttcattactttttgaaaattatattt |
181 |
Q |
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| T |
40299458 |
tttgtttctttatgacatgaatatgcatttgtcaaagttgtgttcattactttttgaaaattatattt |
40299525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 186 - 324
Target Start/End: Original strand, 40314223 - 40314361
Alignment:
| Q |
186 |
ttgagttttaaaatgaaggcttaacactgtgatgtgtaattgtcacattatatagacttatctcatacggtgccagttagttaatttcattccagaatga |
285 |
Q |
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| T |
40314223 |
ttgagttttaaaatgaaggcttaatactgtgatgtgtaattgtcacattatatagacttatctcatacggtgccagttagttaatttcattctagaatga |
40314322 |
T |
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| Q |
286 |
cattcttatgccggcctgttaataatgattcctatgcta |
324 |
Q |
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| T |
40314323 |
cattcttatgccggcctgttaataatgattcctatgcta |
40314361 |
T |
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