View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_38 (Length: 326)
Name: NF14267_low_38
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 323
Target Start/End: Original strand, 33023646 - 33023958
Alignment:
| Q |
9 |
tttaggagacaaaaagaagattaagttgaagctcctaacataatgatgaaatcaggaacaaagaatcaact-aagaaagtttggaaagttggtaaacctt |
107 |
Q |
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| T |
33023646 |
tttaggagacaaaaagaagattaagttgaagctcctaacataatgatgaaatcaggaacaaagaatcaactcaagaaagtttgggaagttggtaaacctt |
33023745 |
T |
|
| Q |
108 |
gataaatattgatgtgatcgttgtaggaacaacaacaatgagaagttatcatgtgctaaatccattatataaattgcaaccagaatttcagttgctacat |
207 |
Q |
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| T |
33023746 |
gataaatattgatgtgatcgttgtaggaacaacaacaatgagaagttatcatgtgctaaatccactatataaattgcaaccagaatttcagttgctacat |
33023845 |
T |
|
| Q |
208 |
atatattataatgcaagaggtataatatatcaaagtgcaaaatactcaaacgatgaagcttacaagaagaaaataatacatatattttgacaggaattcc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
33023846 |
atatattataatgcaagaggtataatatatcaaagtgcaaaatactcaaacgatgaagcttacaagaagaa---aatacatatattttcacttgaattcc |
33023942 |
T |
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| Q |
308 |
taagtgtgaaaataat |
323 |
Q |
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|||||||||||||||| |
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| T |
33023943 |
taagtgtgaaaataat |
33023958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 17591816 - 17591744
Alignment:
| Q |
148 |
agaagttatcatgtg-ctaaatccattatataaattgcaaccagaatttcagttgctacatatatattataat |
219 |
Q |
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|||| |||||||||| ||||||| |||||||||||||||||||| |||||| ||| |||| ||| |||||||| |
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| T |
17591816 |
agaaattatcatgtgactaaatctattatataaattgcaaccaggatttcaattggtacaaataaattataat |
17591744 |
T |
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