View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_39 (Length: 314)
Name: NF14267_low_39
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 29612225 - 29612502
Alignment:
| Q |
13 |
attcttaaccagtgaatcacttttttaaattacatatattaggtcataaaatcccctcatacaaacacatggcaaacattactgaattcttgttatattg |
112 |
Q |
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| T |
29612225 |
attcttaaccagtgaatcacttttttaaattacatatattaggtcataaaatcccctcatacaaacacatggcaaacattactgaattcttgttatattg |
29612324 |
T |
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| Q |
113 |
cagaattttcagaatgttgtgggagatattgagatttcatggaaggtttctagtggcaacgcattatggagactagttggccttgtgtcaagtgtatttg |
212 |
Q |
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| T |
29612325 |
cagaattttcagaatgttgtgggagatattcagatttcatcgaaggtttctagtggcaacgcattttggagactagttggccttgtgtcaagtgtatttg |
29612424 |
T |
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| Q |
213 |
gcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaacattttcaaaatctctctgtatg |
290 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
29612425 |
gcctattgtgttatgctcagagcccttctttcaatcgtttaattggaagatggaacattgtcaagttctctctgtatg |
29612502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 298
Target Start/End: Original strand, 29524602 - 29524721
Alignment:
| Q |
179 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaacattttcaaaa |
278 |
Q |
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| T |
29524602 |
tggagaatagttggaattgtgtcaagtgtagtaggcctattatgtaatgctcagagccattctttcaatcgtttcattggaaaatggaacactctcaagt |
29524701 |
T |
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| Q |
279 |
tctctctgtatgtggtgttt |
298 |
Q |
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| T |
29524702 |
tctttctgtatggggtgttt |
29524721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 29529077 - 29528989
Alignment:
| Q |
179 |
tggagactagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaagatggaa |
267 |
Q |
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|||||| ||||||| ||| ||||||||||| ||||||| || |||||| ||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
29529077 |
tggagagtagttgggcttatgtcaagtgtagttggcctgttatgttatgctctgagcccttctttcaatcgattaattggaaggtggaa |
29528989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 29475402 - 29475320
Alignment:
| Q |
178 |
atggagactagttggccttgtgtcaagtgtatttggcctattgtgttatcctcagagcccttctttcaatcgtttaattggaa |
260 |
Q |
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||||||| ||||||||||| |||||||| || | || || | |||||| ||| |||||||||||||||||| |||||||||| |
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| T |
29475402 |
atggagagtagttggccttatgtcaagtatagtcggtctggtttgttatgctctgagcccttctttcaatcgattaattggaa |
29475320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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