View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_40 (Length: 314)
Name: NF14267_low_40
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 35976411 - 35976697
Alignment:
| Q |
18 |
gaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttttgtttgctcttcgcaataggtggcataattgcaatcaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35976411 |
gaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttctgtttgctcttcgcaataggtggcataattgcaatcaag |
35976510 |
T |
|
| Q |
118 |
gcggcatttccactttcatctcatatttttctcgaagggaattgttgtgcggataagcttgtgaatcatggtcacaacttggatgttgtttttggtggga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35976511 |
gcggcatttccactttcatctcatatttttctcgaagggaattgttgtgtggataagcttgtgaatcatggtcacaacttggatgttgtttttggtggga |
35976610 |
T |
|
| Q |
218 |
ggctttcccattgtttatgagagatgatttttatagagacaatacggattttccgttatccttaggtctcttgctttcattttggcc |
304 |
Q |
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| T |
35976611 |
ggctttcccattgtttatgagagatgatttttatagagacaacacggattttccgttatccttaggtctcttgctttcattttggcc |
35976697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 34377229 - 34376949
Alignment:
| Q |
18 |
gaaccaatggtcccttactctaatattcatagatggtattggaataatcctacgttagttttgtttgctcttcgcaataggtggcataattgcaatcaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||| | ||||||| |
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| T |
34377229 |
gaaccaatggtcccttactctaatattcatagatagtattggaat---cctacgttagttctgtttgctcttcgcaataggtgccataatggtaatcaag |
34377133 |
T |
|
| Q |
118 |
gcggcatttccactttcatctcatatttttctcgaagggaattgttgtgcggataagcttgtgaatcatggtcacaacttggatgttgtttttggtggga |
217 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
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| T |
34377132 |
gcgacatttccactttcatctcatattttctccgaagggaattgttgtgcggataagcttgcgcatcatggtcaca---gggatgttgtttttggtggga |
34377036 |
T |
|
| Q |
218 |
ggctttcccattgtttatgagagatgatttttatagagaca-atacggattttccgttatccttaggtctcttgctttcattttggc |
303 |
Q |
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||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34377035 |
ggcttccccattgtttattagagatgattttgttagagacatgtacggattttccgttatccttaggtctcttgctttgtttttggc |
34376949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 12879187 - 12879067
Alignment:
| Q |
184 |
catggtcacaacttggatgttgtttttggtgggaggctttcccattgtttatgagagatgatttttatagagaca-atacggattttccgttatccttag |
282 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
12879187 |
catggtcacaacttggatgttgtttttggtgggaggctttcccattgtttattagagatgatttttatagagacatatacagattttccgttatccttag |
12879088 |
T |
|
| Q |
283 |
gtctcttgctttcattttggc |
303 |
Q |
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|
||||||||||| |||||||| |
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|
| T |
12879087 |
atctcttgctttgattttggc |
12879067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 12879241 - 12879197
Alignment:
| Q |
18 |
gaaccaatggtcccttactctaatattcatagatggtattggaat |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12879241 |
gaaccaatggtcccttactctaatattcatagatggtattggaat |
12879197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 10378581 - 10378483
Alignment:
| Q |
120 |
ggcatttcca--ctttcatctcatatttttctcgaagggaattgttgtgcggataagcttgtgaatcatggtcacaacttggatgttgtt-tttggtgg |
215 |
Q |
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|||||||||| ||||||||||||||||||| |||||| ||||||||| | |||||| | | ||||||||||||||||||| || |||| |||||||| |
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| T |
10378581 |
ggcatttccatcctttcatctcatatttttcgcgaaggaaattgttgtacagataagttagcaaatcatggtcacaacttggttgatgttatttggtgg |
10378483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 34796568 - 34796609
Alignment:
| Q |
133 |
tcatctcatatttttctcgaagggaattgttgtgcggataag |
174 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |
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| T |
34796568 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataag |
34796609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 31326633 - 31326590
Alignment:
| Q |
131 |
tttcatctcatatttttctcgaagggaattgttgtgcggataag |
174 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
31326633 |
tttcatctcatatttttcgcgaaggaaattgttgtgcggataag |
31326590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 25971359 - 25971319
Alignment:
| Q |
133 |
tcatctcatatttttctcgaagggaattgttgtgcggataa |
173 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| |
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| T |
25971359 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataa |
25971319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 20937160 - 20937119
Alignment:
| Q |
133 |
tcatctcatatttttctcgaagggaattgttgtgcggataag |
174 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |
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| T |
20937160 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataag |
20937119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 22523149 - 22523108
Alignment:
| Q |
133 |
tcatctcatatttttctcgaagggaattgttgtgcggataag |
174 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||| |
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| T |
22523149 |
tcatctcatatttttcgtgaaggtaattgttgtgcggataag |
22523108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 23123706 - 23123746
Alignment:
| Q |
133 |
tcatctcatatttttctcgaagggaattgttgtgcggataa |
173 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||| |
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| T |
23123706 |
tcatctcatatttttcgcgaaggtaattgctgtgcggataa |
23123746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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