View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_49 (Length: 273)
Name: NF14267_low_49
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 14006211 - 14006457
Alignment:
| Q |
10 |
aagaatatcagtgtggaaataaactatgtttccttctagcaaaggttgtttatgtgaagtcaaataaattgctaaaggttgctttcttattgagcatagt |
109 |
Q |
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| T |
14006211 |
aagaaaatcagtgtggaaataaactatgtttccttctagcaaaggttgtttatgtgaagtcaaataaattgctaaaggttgctttcttattgagcatagt |
14006310 |
T |
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| Q |
110 |
cactctaattgacagtgagagttgatctaaagtcaatgaaacaaaaaagtagcaaatgtgaacacaaatgaaaatgaagatagtttttgaaattattatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
14006311 |
cactctaattgacagtgagagttgatctaaagtcaatgaaacaaaaaagtagcaaatgtgaaaacaaatgaaaatgaagatagtttttgaaattatta-t |
14006409 |
T |
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| Q |
210 |
ttgattaaatgtcaaccacattgctacaactactaatttggtgttttt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14006410 |
ttgattaaatgtcaaccacattgctacaactactaatttgttgttttt |
14006457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 3884486 - 3884351
Alignment:
| Q |
10 |
aagaatatcagtgtggaaataaactatgtttccttctagcaaaggttgtttatgtgaagtcaaataaattgctaaaggttgctttcttattgagcatagt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884486 |
aagaaaatcagtgtggaaataaactatgtttccttctagcaaaggttgtttatgcgaagtcaaataaattgctaaaggttgctttcttattgagcatagt |
3884387 |
T |
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| Q |
110 |
cactctaattgacagtgagagttgatctaaagtcaa |
145 |
Q |
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| T |
3884386 |
cactctaattgacagtgagagttgatttaaagtcaa |
3884351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 3883936 - 3883783
Alignment:
| Q |
30 |
aaactatgtttccttctagcaaaggttgtttatgtg--aagtcaaataaattgctaa-------aggttgctttcttattgagcatagtcactctaattg |
120 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||| |||| ||| |||||||| || |||||||||||||| ||||||||| |
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| T |
3883936 |
aaactatgtttccttcaagcaaaggttgtttatgtgtgaagtcaaatatattgataacttataaaggttgctgtcatattgagcatagtccctctaattg |
3883837 |
T |
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| Q |
121 |
acagtgagagttgatctaaagtcaatgaaacaaaaaagtagcaaatgtgaacac |
174 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3883836 |
acgctgagagttgatctaaagtcaatgaaacaaaaaagtagcaaatgtgaacac |
3883783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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