View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14267_low_5 (Length: 692)
Name: NF14267_low_5
Description: NF14267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14267_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 15 - 679
Target Start/End: Complemental strand, 35922199 - 35921535
Alignment:
| Q |
15 |
cacatcaaagaacccttgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcatttcccttaccctttcaaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922199 |
cacatcaaagaacccttgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcatttcccttaccctttcaaac |
35922100 |
T |
|
| Q |
115 |
tgttcaacctccctatctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgccccattgctccaattcacttcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922099 |
tgttcaacctccctatctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgccccattgctccaattcacttcc |
35922000 |
T |
|
| Q |
215 |
ctcctcaactcacatcctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921999 |
ctcctcaactcacatcctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatct |
35921900 |
T |
|
| Q |
315 |
cactgtctcaaataccccaatcaaagcttctggaccttacgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcact |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921899 |
cactgtctcaaataccccaatcaaagcttctggaccttatgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcact |
35921800 |
T |
|
| Q |
415 |
ggttttctaccaaaatacatccattccaacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921799 |
ggttttctaccaaaatacatccattccaacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatg |
35921700 |
T |
|
| Q |
515 |
gccttgaaagtttgaatctttcttcaaatgggttgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaa |
614 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921699 |
gccttgaaagtttgaatctttcttcaaatgggctgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaa |
35921600 |
T |
|
| Q |
615 |
ttcattttcagggtctatcccagattcaatttctgcaattccaggtttggttcacatggatctga |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921599 |
ttcattttcagggtctatcccagattcaatttctgcaattccaggtttggttcacatggatctga |
35921535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 242 - 647
Target Start/End: Complemental strand, 5124098 - 5123693
Alignment:
| Q |
242 |
ccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaataccccaatcaaagc |
341 |
Q |
| |
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||||||| | ||||||||| || |||| ||||| ||||| ||||| ||||| || || ||||||||||| ||| |||||||| | | ||||||| |
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| T |
5124098 |
ccttcactttcatcaacagcttcaacaaaatctctggtgtttggctttctcagcttcataatctcactgatcttactatctcaaatgttcaagtcaaagc |
5123999 |
T |
|
| Q |
342 |
ttctggaccttacgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcactggttttctaccaaaatacatccattcc |
441 |
Q |
| |
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|||||| ||||| || || |||| ||||||||| | ||||| | || |||||||| ||| | ||||||||||| ||| |||| | || ||||| |
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| T |
5123998 |
ttctggtccttatgtcattcttggtcacatgaactacctcaactcattgaccatttctaatgcaaatctcactggctttttacctggtcatattcattct |
5123899 |
T |
|
| Q |
442 |
aacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatggccttgaaagtttgaatctttcttcaa |
541 |
Q |
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|| |||||||| | ||||||||| || | ||||||||||| ||||||||||| ||||| |||||||| | | |||||||||||||||||||| | |
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| T |
5123898 |
aatctgacccatgttgatttttcaggtaatcaactcaaaggaaatatacccttttcaattacaatgcttgaaagtttagaaagtttgaatctttcttcta |
5123799 |
T |
|
| Q |
542 |
atgggttgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaattcattttcagggtctatcccagattc |
641 |
Q |
| |
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|| | | ||||| ||||||||||| | || ||||| ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
5123798 |
ataagcttgttggtgaaataccctcttccattggtgacttgatttctctaaaaaatctatctttagcttcaaattcattttctgggtctatcccagattc |
5123699 |
T |
|
| Q |
642 |
aatttc |
647 |
Q |
| |
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| |||| |
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|
| T |
5123698 |
attttc |
5123693 |
T |
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